Distribution of Small RNA-Generating Loci from Each Chromosome

<div><p>(A) Scrolling-window analysis (50,000-nt window and 10,000-nt scroll) of small RNA loci. Total, repeat-normalized, and unique small RNA loci, as well as transposon/retroelement loci, are shown. Abundance of repeat-normalized, library-size-normalized counts (individual sequencing reads) are also shown.</p> <p>(B) Scrolling-window analysis of repeat-normalized, library-size-normalized small RNA abundance in Col-0, <i>rdr2,</i> and <i>dcl3.</i> The summed, 21- and 22-nt size classes (blue, above x-axis) and 24-nt size class (red, below x-axis) were plotted independently. Note that in both (A and B), maximum values plotted were capped at the value corresponding to the maximum y-axis value.</p> <p>(C) Scrolling-window analysis of relative increase (red) or decrease (green) in repeat-normalized, library-size-normalized small RNA abundance in each mutant. Col-0 inflorescence was used as the reference library.</p>