LD Patterns for High Polymorphism and Reference Genes

<p>LD are shown by the <i>r²</i> statistic, with white for <i>r²</i> = 0, shades of gray for 0 < <i>r²</i> < 1, and black for <i>r²</i> = 1. Genes are arranged by chromosome as in <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.0020199#pgen-0020199-g001" target="_blank">Figure 1</a> and <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.0020199#pgen-0020199-t001" target="_blank">Table 1</a>. The haplotype blocks are delineated by bold lines. (A) <i>O. sativa.</i> (B) O. rufipogon. In both panels, the main one is for high polymorphism genes and the inset is for the less polymorphic reference genes.