Publication date

March 2013

DOI

10.1371/journal.pone.0058984.g008

Abstract

In this median joining network diagram, we have included all samples collected in Brazil prior to 1996. Large colored circles come from the sites listed in the key and are proportional to the number of isolates with that microsatellite profile. The small red circles represent hypothetical nodes that link haplotypes seen among our samples.</p

Extracted data

We use cookies to provide a better user experience.

Data Protection

Open link

Publication date

March 2013

DOI

10.1371/journal.pone.0058984.g008

Abstract

Extracted data

Renata Aparecida dos Santos Alitto (6256574)
Antonia Cecília Zacagnini Amaral (6256577)
Letícia Dias de Oliveira (6256580)
Helena Serrano (6256583)
Karin Regina Seger (6256586)
Pablo Damian Borges Guilherme (6256589)
Maikon Di Domenico (4056862)
Ana Beardsley Christensen (6256592)
Luciana Bolsoni Lourenço (2805274)
Marcos Tavares (6256595)
Michela Borges (6256598)

January 2019

Each circle represents one haplotype and their size is proportional to the number of individuals pos...

Median Joining Networks.

Stefania Vai (248852)
Silvia Ghirotto (279904)
Elena Pilli (248859)
Francesca Tassi (279905)
Martina Lari (79091)
Ermanno Rizzi (31120)
Laura Matas-Lalueza (614001)
Oscar Ramirez (2551210)
Carles Lalueza-Fox (116811)
Alessandro Achilli (42157)
Anna Olivieri (144908)
Antonio Torroni (42164)
Hovirag Lancioni (160231)
Caterina Giostra (687917)
Elena Bedini (687918)
Luisella Pejrani Baricco (687919)
Giuseppe Matullo (136983)
Cornelia Di Gaetano (136935)
Alberto Piazza (136979)
Krishna Veeramah (687920)
Patrick Geary (687921)
David Caramelli (79089)
Guido Barbujani (248880)

January 2015

Node sizes are proportional to haplotype frequencies. Variable positions are indicated along link...

Median-joining haplotype network based on T.dimidiata and T. hegneri cytochrome b haplotypes.

Fernando A. Monteiro (43725)
Tatiana Peretolchina (441420)
Cristiano Lazoski (441421)
Kecia Harris (441422)
Ellen M. Dotson (199505)
Fernando Abad-Franch (127663)
Elsa Tamayo (441423)
Pamela M. Pennington (441424)
Carlota Monroy (266368)
Celia Cordon-Rosales (353382)
Paz Maria Salazar-Schettino (5655931)
Andrés Gómez-Palacio (441425)
Mario J. Grijalva (235323)
Charles B. Beard (441426)
Paula L. Marcet (199497)

August 2013

The size of the circles on the network is proportional to haplotype frequency. Small red circles ...

Network diagram of Brazilian data from the late 1990s.

Sean M. Griffing (343855)
Giselle M. Rachid Viana (390509)
Tonya Mixson-Hayden (251076)
Sankar Sridaran (343856)
Mohammad Tauqeer Alam (141646)
Alexandre Macedo de Oliveira (3841552)
John W. Barnwell (185405)
Ananias A. Escalante (170944)
Marinete Marins Povoa (390510)
Venkatachalam Udhayakumar (48734)

March 2013

In this median joining network diagram, we have included all data that falls between 1996 and 199...

Median-joining network of haplotype Q1a2-M3 in 14 samples from Latin American population based on 15 STR markers.

Luz Angela Alonso Morales (5979137)
Andrea Casas-Vargas (5979140)
Madelyn Rojas Castro (5979143)
Rafael Resque (2591374)
Ândrea Kelly Ribeiro-dos-Santos (5979146)
Sidney Santos (151965)
Leonor Gusmão (151951)
William Usaquén (5979149)

November 2018

In the figure, the circles represent haplotypes, with areas proportional to their frequencies, and t...

Median-joining network for the different haplotypes.

Oladele Teslim Ojuromi (327033)
Fernando Izquierdo (327035)
Soledad Fenoy (327037)
Adetayo Fagbenro-Beyioku (327038)
Wellington Oyibo (327039)
Alani Akanmu (327040)
Nkiruka Odunukwe (327041)
Nuno Henriques-Gil (327042)
Carmen del Aguila (327043)

February 2013

Circles are proportional to the frequency of each haplotype. The colour of each sector refers to ...

Reduced median-joining network based on concatenated sequences of six gene fragments for 33 strains of L. (V.) braziliensis from Santa Catarina, Brazil, with year, city of residence, and origin of case designated.

Mariel A. Marlow (522820)
Mariana C. Boité (123789)
Gabriel Eduardo M. Ferreira (218417)
Mario Steindel (4253572)
Elisa Cupolillo (123796)

February 2014

Green nodes represent autochthonous cases and red nodes represent imported cases.</p

Network Analysis of Clonets in 1999 and Relatedness to Iquitos Clonets in 2006–2007.

Sean M. Griffing (343855)
Tonya Mixson-Hayden (251076)
Sankar Sridaran (343856)
Md Tauqeer Alam (251074)
Andrea M. McCollum (251077)
César Cabezas (343857)
Wilmer Marquiño Quezada (343858)
John W. Barnwell (185405)
Alexandre Macedo De Oliveira (343859)
Carmen Lucas (260478)
Nancy Arrospide (343860)
Ananias A. Escalante (170944)
David J. Bacon (106395)
Venkatachalam Udhayakumar (48734)

February 2013

A network diagram of Iquitos in comparison to clonets calculated from neutral marker data from 19...

Haplotype networks of 288 isolates at ITS1 locus.

Jiufeng Sun (277929)
Yan Huang (46805)
Huaiqiu Huang (293199)
Pei Liang (277931)
Xiaoyun Wang (148866)
Qiang Mao (277930)
Jingtao Men (176391)
Wenjun Chen (176385)
Chuanhuan Deng (423299)
Chenhui Zhou (176400)
Xiaoli Lv (176387)
Juanjuan Zhou (277934)
Fan Zhang (46132)
Ran Li (57928)
Yanli Tian (54277)
Huali Lei (176397)
Chi Liang (176404)
Xuchu Hu (176405)
Jin Xu (31283)
Xuerong Li (176411)
XinbingYu (423300)

June 2013

The sampled haplotypes are indicated by circles; the geographical regions from which the sample w...

Median joining network derived from reconstructed DNA sequence haplotype of CRTISO gene.

Vanessa Soufflet-Freslon (157598)
Matthieu Jourdan (442003)
Jérémy Clotault (157593)
Sébastien Huet (442004)
Mathilde Briard (157602)
Didier Peltier (157595)
Emmanuel Geoffriau (157605)

August 2013

Haplotypes are displayed at network nodes and are symbolised by circles whose diameter is proport...

Median-joining network of 25 Q-M242*-(xM3)-DYS391*6 South American Y-chromosomes using 15 loci STR.

Luz Angela Alonso Morales (5979137)
Andrea Casas-Vargas (5979140)
Madelyn Rojas Castro (5979143)
Rafael Resque (2591374)
Ândrea Kelly Ribeiro-dos-Santos (5979146)
Sidney Santos (151965)
Leonor Gusmão (151951)
William Usaquén (5979149)

November 2018

The circles represent haplotypes, with areas proportional to their frequencies; the numbers of haplo...

Median-joining network based on concatenated sequences of six gene fragments for 86 strains of L. (V.) braziliensis from Brazil, with case origin designated for strains from Santa Catarina.

Mariel A. Marlow (522820)
Mariana C. Boité (123789)
Gabriel Eduardo M. Ferreira (218417)
Mario Steindel (4253572)
Elisa Cupolillo (123796)

February 2014

Green nodes represent autochthonous cases and red nodes represent imported cases.</p

Median-joining network analysis reveals relationships among individuals.

Stefania Bennici (5329007)
Giuseppina Las Casas (5329004)
Gaetano Distefano (138446)
Mario Di Guardo (473933)
Alberto Continella (5329010)
Filippo Ferlito (5329013)
Alessandra Gentile (138451)
Stefano La Malfa (138449)

June 2018

Haplotypes have been calculated based on the four cpDNA markers. The pie charts highlight the rel...

Median-joining haplotype network based on the concatenated matrix of 16S and COI gene sequences.

Renata Aparecida dos Santos Alitto (6256574)
Antonia Cecília Zacagnini Amaral (6256577)
Letícia Dias de Oliveira (6256580)
Helena Serrano (6256583)
Karin Regina Seger (6256586)
Pablo Damian Borges Guilherme (6256589)
Maikon Di Domenico (4056862)
Ana Beardsley Christensen (6256592)
Luciana Bolsoni Lourenço (2805274)
Marcos Tavares (6256595)
Michela Borges (6256598)

January 2019

Each circle represents one haplotype and their size is proportional to the number of individuals pos...

Median Joining Networks.

Stefania Vai (248852)
Silvia Ghirotto (279904)
Elena Pilli (248859)
Francesca Tassi (279905)
Martina Lari (79091)
Ermanno Rizzi (31120)
Laura Matas-Lalueza (614001)
Oscar Ramirez (2551210)
Carles Lalueza-Fox (116811)
Alessandro Achilli (42157)
Anna Olivieri (144908)
Antonio Torroni (42164)
Hovirag Lancioni (160231)
Caterina Giostra (687917)
Elena Bedini (687918)
Luisella Pejrani Baricco (687919)
Giuseppe Matullo (136983)
Cornelia Di Gaetano (136935)
Alberto Piazza (136979)
Krishna Veeramah (687920)
Patrick Geary (687921)
David Caramelli (79089)
Guido Barbujani (248880)

January 2015

Node sizes are proportional to haplotype frequencies. Variable positions are indicated along link...

Median-joining haplotype network based on T.dimidiata and T. hegneri cytochrome b haplotypes.

Fernando A. Monteiro (43725)
Tatiana Peretolchina (441420)
Cristiano Lazoski (441421)
Kecia Harris (441422)
Ellen M. Dotson (199505)
Fernando Abad-Franch (127663)
Elsa Tamayo (441423)
Pamela M. Pennington (441424)
Carlota Monroy (266368)
Celia Cordon-Rosales (353382)
Paz Maria Salazar-Schettino (5655931)
Andrés Gómez-Palacio (441425)
Mario J. Grijalva (235323)
Charles B. Beard (441426)
Paula L. Marcet (199497)

August 2013

The size of the circles on the network is proportional to haplotype frequency. Small red circles ...

Network diagram of Brazilian data from the late 1990s.

Sean M. Griffing (343855)
Giselle M. Rachid Viana (390509)
Tonya Mixson-Hayden (251076)
Sankar Sridaran (343856)
Mohammad Tauqeer Alam (141646)
Alexandre Macedo de Oliveira (3841552)
John W. Barnwell (185405)
Ananias A. Escalante (170944)
Marinete Marins Povoa (390510)
Venkatachalam Udhayakumar (48734)

March 2013

In this median joining network diagram, we have included all data that falls between 1996 and 199...

Median-joining network of haplotype Q1a2-M3 in 14 samples from Latin American population based on 15 STR markers.

Luz Angela Alonso Morales (5979137)
Andrea Casas-Vargas (5979140)
Madelyn Rojas Castro (5979143)
Rafael Resque (2591374)
Ândrea Kelly Ribeiro-dos-Santos (5979146)
Sidney Santos (151965)
Leonor Gusmão (151951)
William Usaquén (5979149)

November 2018

In the figure, the circles represent haplotypes, with areas proportional to their frequencies, and t...

Median-joining network for the different haplotypes.

Oladele Teslim Ojuromi (327033)
Fernando Izquierdo (327035)
Soledad Fenoy (327037)
Adetayo Fagbenro-Beyioku (327038)
Wellington Oyibo (327039)
Alani Akanmu (327040)
Nkiruka Odunukwe (327041)
Nuno Henriques-Gil (327042)
Carmen del Aguila (327043)

February 2013

Circles are proportional to the frequency of each haplotype. The colour of each sector refers to ...

Mariel A. Marlow (522820)
Mariana C. Boité (123789)
Gabriel Eduardo M. Ferreira (218417)
Mario Steindel (4253572)
Elisa Cupolillo (123796)

February 2014

Green nodes represent autochthonous cases and red nodes represent imported cases.</p

Network Analysis of Clonets in 1999 and Relatedness to Iquitos Clonets in 2006–2007.

Sean M. Griffing (343855)
Tonya Mixson-Hayden (251076)
Sankar Sridaran (343856)
Md Tauqeer Alam (251074)
Andrea M. McCollum (251077)
César Cabezas (343857)
Wilmer Marquiño Quezada (343858)
John W. Barnwell (185405)
Alexandre Macedo De Oliveira (343859)
Carmen Lucas (260478)
Nancy Arrospide (343860)
Ananias A. Escalante (170944)
David J. Bacon (106395)
Venkatachalam Udhayakumar (48734)

February 2013

A network diagram of Iquitos in comparison to clonets calculated from neutral marker data from 19...

Haplotype networks of 288 isolates at ITS1 locus.

Jiufeng Sun (277929)
Yan Huang (46805)
Huaiqiu Huang (293199)
Pei Liang (277931)
Xiaoyun Wang (148866)
Qiang Mao (277930)
Jingtao Men (176391)
Wenjun Chen (176385)
Chuanhuan Deng (423299)
Chenhui Zhou (176400)
Xiaoli Lv (176387)
Juanjuan Zhou (277934)
Fan Zhang (46132)
Ran Li (57928)
Yanli Tian (54277)
Huali Lei (176397)
Chi Liang (176404)
Xuchu Hu (176405)
Jin Xu (31283)
Xuerong Li (176411)
XinbingYu (423300)

June 2013

The sampled haplotypes are indicated by circles; the geographical regions from which the sample w...

Median joining network derived from reconstructed DNA sequence haplotype of CRTISO gene.

Vanessa Soufflet-Freslon (157598)
Matthieu Jourdan (442003)
Jérémy Clotault (157593)
Sébastien Huet (442004)
Mathilde Briard (157602)
Didier Peltier (157595)
Emmanuel Geoffriau (157605)

August 2013

Haplotypes are displayed at network nodes and are symbolised by circles whose diameter is proport...

Median-joining network of 25 Q-M242*-(xM3)-DYS391*6 South American Y-chromosomes using 15 loci STR.

Luz Angela Alonso Morales (5979137)
Andrea Casas-Vargas (5979140)
Madelyn Rojas Castro (5979143)
Rafael Resque (2591374)
Ândrea Kelly Ribeiro-dos-Santos (5979146)
Sidney Santos (151965)
Leonor Gusmão (151951)
William Usaquén (5979149)

November 2018

The circles represent haplotypes, with areas proportional to their frequencies; the numbers of haplo...

Mariel A. Marlow (522820)
Mariana C. Boité (123789)
Gabriel Eduardo M. Ferreira (218417)
Mario Steindel (4253572)
Elisa Cupolillo (123796)

February 2014

Green nodes represent autochthonous cases and red nodes represent imported cases.</p

Median-joining network analysis reveals relationships among individuals.

Stefania Bennici (5329007)
Giuseppina Las Casas (5329004)
Gaetano Distefano (138446)
Mario Di Guardo (473933)
Alberto Continella (5329010)
Filippo Ferlito (5329013)
Alessandra Gentile (138451)
Stefano La Malfa (138449)

June 2018

Haplotypes have been calculated based on the four cpDNA markers. The pie charts highlight the rel...

Median-joining haplotype network based on the concatenated matrix of 16S and COI gene sequences.

Renata Aparecida dos Santos Alitto (6256574)
Antonia Cecília Zacagnini Amaral (6256577)
Letícia Dias de Oliveira (6256580)
Helena Serrano (6256583)
Karin Regina Seger (6256586)
Pablo Damian Borges Guilherme (6256589)
Maikon Di Domenico (4056862)
Ana Beardsley Christensen (6256592)
Luciana Bolsoni Lourenço (2805274)
Marcos Tavares (6256595)
Michela Borges (6256598)

January 2019

Each circle represents one haplotype and their size is proportional to the number of individuals pos...

Median Joining Networks.

Stefania Vai (248852)
Silvia Ghirotto (279904)
Elena Pilli (248859)
Francesca Tassi (279905)
Martina Lari (79091)
Ermanno Rizzi (31120)
Laura Matas-Lalueza (614001)
Oscar Ramirez (2551210)
Carles Lalueza-Fox (116811)
Alessandro Achilli (42157)
Anna Olivieri (144908)
Antonio Torroni (42164)
Hovirag Lancioni (160231)
Caterina Giostra (687917)
Elena Bedini (687918)
Luisella Pejrani Baricco (687919)
Giuseppe Matullo (136983)
Cornelia Di Gaetano (136935)
Alberto Piazza (136979)
Krishna Veeramah (687920)
Patrick Geary (687921)
David Caramelli (79089)
Guido Barbujani (248880)

January 2015

Node sizes are proportional to haplotype frequencies. Variable positions are indicated along link...

Median-joining haplotype network based on T.dimidiata and T. hegneri cytochrome b haplotypes.

Fernando A. Monteiro (43725)
Tatiana Peretolchina (441420)
Cristiano Lazoski (441421)
Kecia Harris (441422)
Ellen M. Dotson (199505)
Fernando Abad-Franch (127663)
Elsa Tamayo (441423)
Pamela M. Pennington (441424)
Carlota Monroy (266368)
Celia Cordon-Rosales (353382)
Paz Maria Salazar-Schettino (5655931)
Andrés Gómez-Palacio (441425)
Mario J. Grijalva (235323)
Charles B. Beard (441426)
Paula L. Marcet (199497)

August 2013

The size of the circles on the network is proportional to haplotype frequency. Small red circles ...

Network diagram of Brazilian data from the 1980s.

Abstract

Extracted data

Network diagram of Brazilian data from the 1980s.

Abstract

Extracted data

Related items

Related items