UPGMA dendrogram based on PFGE patterns of E. faecium isolates from clinical samples (urine) and water samples (wells, wetland and water treatment plant).

Gonzalo Castillo-Rojas (268833)
Marisa Mazari-Hiríart (5654284)
Sergio Ponce de León (397009)
Rosa I. Amieva-Fernández (397010)
Raúl A. Agis-Juárez (397011)
Johannes Huebner (19110)
Yolanda López-Vidal (91919)

Publication date

April 2013

DOI

10.1371/journal.pone.0059491.g004

Abstract

The UPGMA dendrogram was constructed with the PFGE patterns of 7 strains using the NTSYS-pc program and Jacquard’s coefficient. Mantel test r = 0.76432, p = 0.999.</p

Extracted data

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UPGMA dendrogram based on PFGE patterns of E. faecium isolates from clinical samples (urine) and water samples (wells, wetland and water treatment plant).

Gonzalo Castillo-Rojas (268833)
Marisa Mazari-Hiríart (5654284)
Sergio Ponce de León (397009)
Rosa I. Amieva-Fernández (397010)
Raúl A. Agis-Juárez (397011)
Johannes Huebner (19110)
Yolanda López-Vidal (91919)

Open link

Publication date

April 2013

DOI

10.1371/journal.pone.0059491.g004

Abstract

The UPGMA dendrogram was constructed with the PFGE patterns of 7 strains using the NTSYS-pc program and Jacquard’s coefficient. Mantel test r = 0.76432, p = 0.999.</p

Extracted data

Qiangzheng Sun (305725)
Ruiting Lan (161258)
Jianping Wang (215292)
Shengli Xia (176137)
Yiting Wang (169115)
Yan Wang (15435)
Dong Jin (176152)
Bo Yu (241082)
Yuriy A. Knirel (167229)
Jianguo Xu (12151)

July 2013

The dendrogram constructed using the NotI-digested PFGE patterns was generated by the UPGM...

Dendrogram and Principal Component Analysis (PCA) based on Denaturing Gradient Gel Electrophoresis (DGGE) profiles from caecum samples.

Karsten Buschard (293017)
Axel Kornerup Hansen (129882)
Karen Jensen (353807)
Dicky J. Lindenbergh-Kortleve (353808)
Lilian F. de Ruiter (353809)
Thomas C. Krohn (353810)
Majbritt R. Hufeldt (353811)
Finn K. Vogensen (253469)
Bent Aasted (346580)
Thomas Osterbye (353812)
Bart O. Roep (93164)
Colin de Haar (353813)
Edward E. Nieuwenhuis (353814)

February 2013

A) Dendrogram based on DGGE profiles of PCR amplified 16S rRNA V3 gene region from caecum samples...

MLVF dendrogram of 91 S. aureus isolates from BU patients.

Nana Ama Amissah (625922)
Corinna Glasner (690635)
Anthony Ablordey (144930)
Caitlin S. Tetteh (690636)
Nana Konama Kotey (690637)
Isaac Prah (690638)
Tjip S. van der Werf (102009)
John W. Rossen (519315)
Jan Maarten van Dijl (90770)
Ymkje Stienstra (51284)

February 2015

The dendrogram was generated using the UPGMA algorithm. Additionally, seven technical controls de...

UPGMA dendrogram based on the PFGE patterns of E. faecalis isolates from clinical samples (blood, pleural fluid, urine, wounds, and other respiratory sites) and water samples (wells, wetland and water treatment plant).

Gonzalo Castillo-Rojas (268833)
Marisa Mazari-Hiríart (5654284)
Sergio Ponce de León (397009)
Rosa I. Amieva-Fernández (397010)
Raúl A. Agis-Juárez (397011)
Johannes Huebner (19110)
Yolanda López-Vidal (91919)

April 2013

The UPGMA dendrogram was constructed with the PFGE patterns of 21 strains using the NTSYS-pc prog...

UPGMA dendrogram based on PFGE pattern of 26 K. pneumoniae isolates and their sequence type.

Nathalie Tijet (427660)
Prameet M. Sheth (345820)
Olga Lastovetska (680171)
Catherine Chung (680172)
Samir N. Patel (63266)
Roberto G. Melano (680173)

December 2014

Percentage of similarities is indicated in the branches of the dendrogram.</p

Dendrograms derived from DGGE analysis of the gut microbiota.

Heidi Pauer (5746367)
Cristiane Cassiolato Pires Hardoim (5746370)
Felipe Lopes Teixeira (5746373)
Karla Rodrigues Miranda (5746376)
Davi da Silva Barbirato (5746379)
Denise Pires de Carvalho (410513)
Luis Caetano Martha Antunes (5746382)
Álvaro Augusto da Costa Leitão (5746385)
Leandro Araujo Lobo (5746388)
Regina Maria Cavalcanti Pilotto Domingues (4830516)

September 2018

UPGMA-type dendrograms were constructed based on the similarity matrix resulting from Pearson’s pair...

Dendrogram (UPGMA method, squared representation) based on the homology degree of the spa-types of the 105 MSSA CC398 strains and the 53 MRSA CC398 isolated in France.

Tomasz Chroboczek (414343)
Sandrine Boisset (153256)
Jean-Philippe Rasigade (112270)
Anne Tristan (112266)
Michele Bes (5463008)
Helene Meugnier (3829804)
François Vandenesch (112293)
Jerome Etienne (112284)
Frederic Laurent (3270807)

November 2013

The homology between the repeats of the strains is of 76%. spaCC: spa clonal comple...

Dendrogram (UPGMA method, circular representation) based on the results of DNA microarrays study (172 genes only) of the 105 MSSA CC398 strains and the 53 MRSA CC398 isolated in France.

Tomasz Chroboczek (414343)
Sandrine Boisset (153256)
Jean-Philippe Rasigade (112270)
Anne Tristan (112266)
Michele Bes (5463008)
Helene Meugnier (3829804)
François Vandenesch (112293)
Jerome Etienne (112284)
Frederic Laurent (3270807)

November 2013

For each of the 172 genes, the average of the results of all the strains corresponding to the sam...

Dendrogram displaying the PFGE profiles of the 43 isolates.

Fuli Wu (1608274)
Xuebin Xu (2230003)
Jing Xie (180526)
Shengjie Yi (749007)
Jian Wang (5901)
Xiaoxia Yang (625366)
Chaojie Yang (749006)
Beibei Liang (511813)
Qiuxia Ma (3072051)
Hao Li (31608)
Hongbin Song (340782)
Shaofu Qiu (417685)

August 2016

The strain number, origin, source, sequence type (ST), and H2S phenotype are shown for...

PFGE dendrogram showing the relationship among S. Enteritidis.

M. John Albert (822704)
Dieter Bulach (368712)
Wadha Alfouzan (4428505)
Hidemasa Izumiya (280979)
Glen Carter (4996556)
Khaled Alobaid (6589232)
Fatemah Alatar (6589235)
Abdul Rashid Sheikh (6589238)
Laurent Poirel (13456)

April 2019

The similarities between isolates were evaluated using Dice coefficient and UPGMA clustering method....

PFGE dendrogram showing the relationship among S. Typhimurium.

M. John Albert (822704)
Dieter Bulach (368712)
Wadha Alfouzan (4428505)
Hidemasa Izumiya (280979)
Glen Carter (4996556)
Khaled Alobaid (6589232)
Fatemah Alatar (6589235)
Abdul Rashid Sheikh (6589238)
Laurent Poirel (13456)

April 2019

The similarities between isolates were evaluated using Dice coefficient and UPGMA clustering method....

Relationship of S. flexneri isolates recovered from Guizhou based on NotI-PFGE analysis.

Shijun Li (165293)
Qiangzheng Sun (305725)
Xiaoyu Wei (2794636)
John D. Klena (194511)
Jianping Wang (215292)
Ying Liu (18461)
Kecheng Tian (686128)
Xia Luo (169127)
Changyun Ye (116613)
Jianguo Xu (12151)
Dingming Wang (132237)
Guangpeng Tang (686129)

January 2015

The dendrogram were constructed using UPGMA. The corresponding PFGE pattern, serotype and backgro...

PFGE profiles of the 19 serotype Yv isolates studied and comparison with closest non-Yv strains.

Qiangzheng Sun (305725)
Ruiting Lan (161258)
Jianping Wang (215292)
Shengli Xia (176137)
Yiting Wang (169115)
Yan Wang (15435)
Dong Jin (176152)
Bo Yu (241082)
Yuriy A. Knirel (167229)
Jianguo Xu (12151)

July 2013

The dendrogram constructed using the NotI-digested PFGE patterns was generated by the UPGM...

Dendrogram and Principal Component Analysis (PCA) based on Denaturing Gradient Gel Electrophoresis (DGGE) profiles from caecum samples.

Karsten Buschard (293017)
Axel Kornerup Hansen (129882)
Karen Jensen (353807)
Dicky J. Lindenbergh-Kortleve (353808)
Lilian F. de Ruiter (353809)
Thomas C. Krohn (353810)
Majbritt R. Hufeldt (353811)
Finn K. Vogensen (253469)
Bent Aasted (346580)
Thomas Osterbye (353812)
Bart O. Roep (93164)
Colin de Haar (353813)
Edward E. Nieuwenhuis (353814)

February 2013

A) Dendrogram based on DGGE profiles of PCR amplified 16S rRNA V3 gene region from caecum samples...

MLVF dendrogram of 91 S. aureus isolates from BU patients.

Nana Ama Amissah (625922)
Corinna Glasner (690635)
Anthony Ablordey (144930)
Caitlin S. Tetteh (690636)
Nana Konama Kotey (690637)
Isaac Prah (690638)
Tjip S. van der Werf (102009)
John W. Rossen (519315)
Jan Maarten van Dijl (90770)
Ymkje Stienstra (51284)

February 2015

The dendrogram was generated using the UPGMA algorithm. Additionally, seven technical controls de...

Gonzalo Castillo-Rojas (268833)
Marisa Mazari-Hiríart (5654284)
Sergio Ponce de León (397009)
Rosa I. Amieva-Fernández (397010)
Raúl A. Agis-Juárez (397011)
Johannes Huebner (19110)
Yolanda López-Vidal (91919)

April 2013

The UPGMA dendrogram was constructed with the PFGE patterns of 21 strains using the NTSYS-pc prog...

Dendrograms derived from DGGE analysis of the gut microbiota.

Heidi Pauer (5746367)
Cristiane Cassiolato Pires Hardoim (5746370)
Felipe Lopes Teixeira (5746373)
Karla Rodrigues Miranda (5746376)
Davi da Silva Barbirato (5746379)
Denise Pires de Carvalho (410513)
Luis Caetano Martha Antunes (5746382)
Álvaro Augusto da Costa Leitão (5746385)
Leandro Araujo Lobo (5746388)
Regina Maria Cavalcanti Pilotto Domingues (4830516)

September 2018

UPGMA-type dendrograms were constructed based on the similarity matrix resulting from Pearson’s pair...

Dendrogram (UPGMA method, squared representation) based on the homology degree of the spa-types of the 105 MSSA CC398 strains and the 53 MRSA CC398 isolated in France.

Tomasz Chroboczek (414343)
Sandrine Boisset (153256)
Jean-Philippe Rasigade (112270)
Anne Tristan (112266)
Michele Bes (5463008)
Helene Meugnier (3829804)
François Vandenesch (112293)
Jerome Etienne (112284)
Frederic Laurent (3270807)

November 2013

The homology between the repeats of the strains is of 76%. spaCC: spa clonal comple...

Dendrogram (UPGMA method, circular representation) based on the results of DNA microarrays study (172 genes only) of the 105 MSSA CC398 strains and the 53 MRSA CC398 isolated in France.

Tomasz Chroboczek (414343)
Sandrine Boisset (153256)
Jean-Philippe Rasigade (112270)
Anne Tristan (112266)
Michele Bes (5463008)
Helene Meugnier (3829804)
François Vandenesch (112293)
Jerome Etienne (112284)
Frederic Laurent (3270807)

November 2013

For each of the 172 genes, the average of the results of all the strains corresponding to the sam...

Dendrogram displaying the PFGE profiles of the 43 isolates.

Fuli Wu (1608274)
Xuebin Xu (2230003)
Jing Xie (180526)
Shengjie Yi (749007)
Jian Wang (5901)
Xiaoxia Yang (625366)
Chaojie Yang (749006)
Beibei Liang (511813)
Qiuxia Ma (3072051)
Hao Li (31608)
Hongbin Song (340782)
Shaofu Qiu (417685)

August 2016

The strain number, origin, source, sequence type (ST), and H2S phenotype are shown for...

PFGE dendrogram showing the relationship among S. Enteritidis.

M. John Albert (822704)
Dieter Bulach (368712)
Wadha Alfouzan (4428505)
Hidemasa Izumiya (280979)
Glen Carter (4996556)
Khaled Alobaid (6589232)
Fatemah Alatar (6589235)
Abdul Rashid Sheikh (6589238)
Laurent Poirel (13456)

April 2019

The similarities between isolates were evaluated using Dice coefficient and UPGMA clustering method....

PFGE dendrogram showing the relationship among S. Typhimurium.

M. John Albert (822704)
Dieter Bulach (368712)
Wadha Alfouzan (4428505)
Hidemasa Izumiya (280979)
Glen Carter (4996556)
Khaled Alobaid (6589232)
Fatemah Alatar (6589235)
Abdul Rashid Sheikh (6589238)
Laurent Poirel (13456)

April 2019

The similarities between isolates were evaluated using Dice coefficient and UPGMA clustering method....

Relationship of S. flexneri isolates recovered from Guizhou based on NotI-PFGE analysis.

Shijun Li (165293)
Qiangzheng Sun (305725)
Xiaoyu Wei (2794636)
John D. Klena (194511)
Jianping Wang (215292)
Ying Liu (18461)
Kecheng Tian (686128)
Xia Luo (169127)
Changyun Ye (116613)
Jianguo Xu (12151)
Dingming Wang (132237)
Guangpeng Tang (686129)

January 2015

The dendrogram were constructed using UPGMA. The corresponding PFGE pattern, serotype and backgro...

PFGE profiles of the 19 serotype Yv isolates studied and comparison with closest non-Yv strains.

Qiangzheng Sun (305725)
Ruiting Lan (161258)
Jianping Wang (215292)
Shengli Xia (176137)
Yiting Wang (169115)
Yan Wang (15435)
Dong Jin (176152)
Bo Yu (241082)
Yuriy A. Knirel (167229)
Jianguo Xu (12151)

July 2013

The dendrogram constructed using the NotI-digested PFGE patterns was generated by the UPGM...

Dendrogram and Principal Component Analysis (PCA) based on Denaturing Gradient Gel Electrophoresis (DGGE) profiles from caecum samples.

Karsten Buschard (293017)
Axel Kornerup Hansen (129882)
Karen Jensen (353807)
Dicky J. Lindenbergh-Kortleve (353808)
Lilian F. de Ruiter (353809)
Thomas C. Krohn (353810)
Majbritt R. Hufeldt (353811)
Finn K. Vogensen (253469)
Bent Aasted (346580)
Thomas Osterbye (353812)
Bart O. Roep (93164)
Colin de Haar (353813)
Edward E. Nieuwenhuis (353814)

February 2013

A) Dendrogram based on DGGE profiles of PCR amplified 16S rRNA V3 gene region from caecum samples...

MLVF dendrogram of 91 S. aureus isolates from BU patients.

Nana Ama Amissah (625922)
Corinna Glasner (690635)
Anthony Ablordey (144930)
Caitlin S. Tetteh (690636)
Nana Konama Kotey (690637)
Isaac Prah (690638)
Tjip S. van der Werf (102009)
John W. Rossen (519315)
Jan Maarten van Dijl (90770)
Ymkje Stienstra (51284)

February 2015

The dendrogram was generated using the UPGMA algorithm. Additionally, seven technical controls de...

UPGMA dendrogram based on PFGE patterns of <i>E. faecium</i> isolates from clinical samples (urine) and water samples (wells, wetland and water treatment plant).

Abstract

Extracted data

UPGMA dendrogram based on PFGE patterns of <i>E. faecium</i> isolates from clinical samples (urine) and water samples (wells, wetland and water treatment plant).

Abstract

Extracted data

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