<p>A) Ribbon diagram of Ply with the domain 4 loop residues shown at the base. B) The bottom view of domain 4 showing the relative placement of each loop. C) Zoomed in view of domain 4 and D) is a 90° rotation of domain 4. E) Sequence alignment between Ply (top line) and Pfo (bottom line), centered at the undecapeptide sequence (bold). Areas of homology between the two sequences are shown as <u>underlined</u>. Mutagenesis targets are shown as colored blocks.</p
<p>The alignment was obtained with MUSCLE <a href="http://www.plosone.org/article/info:doi/10.1371/j...
<p>(A) Sequence alignment of lysine riboswitches where gray shaded columns indicate the highly conse...
<p>(a) Sequence alignment of the FHA domain from different proteins. The β strands and loops are in ...
<p>Sequence alignment of human desmoplakin I (DPI), human plectin (PL), human envoplakin (EP), and h...
<p>(a) SMARCAD1, (b) GSG2, (c) NUP35, (d) NEK5, (e) KIF23 and (f) CEP170. MSA illustrates the conser...
<p>Conserved residues are marked with red circles at the bottom <a href="http://www.plosone.org/arti...
<div><p>(A) Ribbon diagram showing the front view (left) and side view (right) of PGRP-SA. The ribbo...
<p>Boundaries between P1 and P2 subdomains are indicated by blue arrows. Identical residues are high...
Upper panel: cartoon representation of the protein with inhibitor S43 shown in sticks and zinc ion a...
<p>The PLD-GAF region of phytochrome sequences are aligned. PHYB, <i>Arabidopsis thaliana</i> phyB; ...
<p>(A) Alignments of three novel sequence motifs among eight PAP2 domain containing proteins using C...
<p><b>(</b>A) Structural sequences alignment between PON1 (pdb:1v04) and PON2 3D model, with “h” and...
<p>Three domains of PgdS, the NlpC/P60 catalytic domains of LytF, LytE and CwlS from <i>B</i>. <i>su...
<p>Alignment of QDE1 ΔN (top sequence), bacterial (middle sequence, orange), and yeast (bottom seque...
Eight hairpins per group were used for the alignment. Alignment viewer (https://alignmentviewer.org/...
<p>The alignment was obtained with MUSCLE <a href="http://www.plosone.org/article/info:doi/10.1371/j...
<p>(A) Sequence alignment of lysine riboswitches where gray shaded columns indicate the highly conse...
<p>(a) Sequence alignment of the FHA domain from different proteins. The β strands and loops are in ...
<p>Sequence alignment of human desmoplakin I (DPI), human plectin (PL), human envoplakin (EP), and h...
<p>(a) SMARCAD1, (b) GSG2, (c) NUP35, (d) NEK5, (e) KIF23 and (f) CEP170. MSA illustrates the conser...
<p>Conserved residues are marked with red circles at the bottom <a href="http://www.plosone.org/arti...
<div><p>(A) Ribbon diagram showing the front view (left) and side view (right) of PGRP-SA. The ribbo...
<p>Boundaries between P1 and P2 subdomains are indicated by blue arrows. Identical residues are high...
Upper panel: cartoon representation of the protein with inhibitor S43 shown in sticks and zinc ion a...
<p>The PLD-GAF region of phytochrome sequences are aligned. PHYB, <i>Arabidopsis thaliana</i> phyB; ...
<p>(A) Alignments of three novel sequence motifs among eight PAP2 domain containing proteins using C...
<p><b>(</b>A) Structural sequences alignment between PON1 (pdb:1v04) and PON2 3D model, with “h” and...
<p>Three domains of PgdS, the NlpC/P60 catalytic domains of LytF, LytE and CwlS from <i>B</i>. <i>su...
<p>Alignment of QDE1 ΔN (top sequence), bacterial (middle sequence, orange), and yeast (bottom seque...
Eight hairpins per group were used for the alignment. Alignment viewer (https://alignmentviewer.org/...
<p>The alignment was obtained with MUSCLE <a href="http://www.plosone.org/article/info:doi/10.1371/j...
<p>(A) Sequence alignment of lysine riboswitches where gray shaded columns indicate the highly conse...
<p>(a) Sequence alignment of the FHA domain from different proteins. The β strands and loops are in ...