<p>(A) GGN18 and GGN20 sgRNAs and their genomic target sequences. Sequences of the variable regions of the sgRNAs are shown here. These sgRNAs contain 1–2 nt mismatches to their genomic target sequences at the 5′ end. sgRNAs bind to the reverse complement strand of the DNA that possess the genomic target sequences (see illustration in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0068708#pone-0068708-g001" target="_blank">Figure 1A</a>). Matching genomic and sgRNA sequences are marked in red, while the mismatches are marked in blue. PAM is underlined. (B) The indel mutation frequencies were assess using the T7EI assay.</p
Additional file 3: sgRNA off-target analysis. Trp53, Rb1 and Rbl2 sgRNAs were analyzed for potential...
<p>The first line shows the wild-type sequence of <i>TRP5</i> from position 128 and the second line ...
(A) Schematic of SpeCas9 structure. The amino acid residues important for specificity are shown belo...
<p><b>A.</b> Indel frequencies of 5′GG sgRNAs modified with the addition of a 5′adenine. <b>B.</b> I...
<p>(A) Schematic illustration of the RGN system. Engineered sgRNA:Cas9 system is depicted here based...
(A) Deletion and indel PCR screening. Representative clones exhibiting all possible band combination...
<p>(A) Schematic illustrating the target sequence (blue) and corresponding PAM (red). PCR amplificat...
Schematic of the GFP activation assay for specificity analysis is shown on the top. A panel of sgRNA...
<p>Representative chromatograms (left) and pyrograms (right) of GNAS wild-type, GNAS R201C, and GNAS...
<p>The sgRNAs targeting <i>fh</i> and <i>gsk3b</i> have been described previously <a href="http://ww...
Mutations associated with tumorigenesis may either arise somatically or can be inherited through the...
Surveyor analysis of the top 5 predicted off-targets for each sgRNA used. Panel shows amplified sequ...
<p>Five cloned DNA fragments of 250 bp containing DNA from PCR amplified sgRNA target regions of (pr...
(A) Schematic representation of the sgRNA sequence targeted in Exon I of Sfabd-A locus. (B) Differen...
<p><b>a.</b> Distribution of different categories of GCRs selected in the sGCR assay. <b>b.-h</b>. C...
Additional file 3: sgRNA off-target analysis. Trp53, Rb1 and Rbl2 sgRNAs were analyzed for potential...
<p>The first line shows the wild-type sequence of <i>TRP5</i> from position 128 and the second line ...
(A) Schematic of SpeCas9 structure. The amino acid residues important for specificity are shown belo...
<p><b>A.</b> Indel frequencies of 5′GG sgRNAs modified with the addition of a 5′adenine. <b>B.</b> I...
<p>(A) Schematic illustration of the RGN system. Engineered sgRNA:Cas9 system is depicted here based...
(A) Deletion and indel PCR screening. Representative clones exhibiting all possible band combination...
<p>(A) Schematic illustrating the target sequence (blue) and corresponding PAM (red). PCR amplificat...
Schematic of the GFP activation assay for specificity analysis is shown on the top. A panel of sgRNA...
<p>Representative chromatograms (left) and pyrograms (right) of GNAS wild-type, GNAS R201C, and GNAS...
<p>The sgRNAs targeting <i>fh</i> and <i>gsk3b</i> have been described previously <a href="http://ww...
Mutations associated with tumorigenesis may either arise somatically or can be inherited through the...
Surveyor analysis of the top 5 predicted off-targets for each sgRNA used. Panel shows amplified sequ...
<p>Five cloned DNA fragments of 250 bp containing DNA from PCR amplified sgRNA target regions of (pr...
(A) Schematic representation of the sgRNA sequence targeted in Exon I of Sfabd-A locus. (B) Differen...
<p><b>a.</b> Distribution of different categories of GCRs selected in the sGCR assay. <b>b.-h</b>. C...
Additional file 3: sgRNA off-target analysis. Trp53, Rb1 and Rbl2 sgRNAs were analyzed for potential...
<p>The first line shows the wild-type sequence of <i>TRP5</i> from position 128 and the second line ...
(A) Schematic of SpeCas9 structure. The amino acid residues important for specificity are shown belo...