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Normalized protein abundance within each of the three proteome fractions, by phylogenetic bins.

Patrik D'haeseleer (101469)
John M. Gladden (162494)
Martin Allgaier (222799)
Patrik S. G. Chain (435193)
Susannah G. Tringe (43680)
Stephanie A. Malfatti (124718)
Joshua T. Aldrich (435194)
Carrie D. Nicora (230020)
Errol W. Robinson (328862)
Ljiljana Pasa-Tolic (154807)
Philip Hugenholtz (13833)
Blake A. Simmons (108789)
Steven W. Singer (162486)

Publication date

July 2013

DOI

10.1371/journal.pone.0068465.g002

Abstract

<p>Normalized protein abundance within each of the three proteome fractions, by phylogenetic bins.</p

Extracted data

Related items

Distribution of homologous protein cluster sizes (clusters of single proteins excluded) within the <i>Ca.</i> L. asiaticus proteome.

Qian Cong (150388)
Lisa N. Kinch (9774)
Bong-Hyun Kim (80574)
Nick V. Grishin (8941)

July 2012

<p>Distribution of homologous protein cluster sizes (clusters of single proteins excluded) within th...

Equal sampling of proteomes.

Arshan Nasir (517262)
Kyung Mo Kim (409167)
Gustavo Caetano-Anollés (65405)

January 2014

<p>Boxplots comparing the distribution of net gains and losses in 100 random phylogenetic trees for ...

Percentage of liver proteins (over all 329 identified proteins; S1 Table) grouped according to different biological processes.

Samuele Bovo (4182802)
Alessio Di Luca (3181494)
Giuliano Galimberti (5742452)
Stefania Dall’Olio (5742455)
Luca Fontanesi (552501)

September 2018

Percentage of liver proteins (over all 329 identified proteins; S1 Table) grouped according to diffe...

Protein abundance per mRNA for first genes and subsequent genes in the operon.

Nhat H.M. Truong (17921685)
Nam T. Vo (17921688)
Binh T. Nguyen (840607)
Son T. Huynh (17921691)
Hoang D. Nguyen (1687678)

February 2024

Protein abundance per mRNA for first genes and subsequent genes in the operon.</p

Statistics of proteins, PPIs, essential proteins, and proteins annotated by 11 labeled compartments in the global PIN of each species.

Xiaoqing Peng (761384)
Jianxin Wang (35827)
Jun Wang (5906)
Fang-Xiang Wu (39390)
Yi Pan (68170)

June 2015

<p>#Protein, #PPI, #<i>Essential protein</i>, and #<i>Annoted Protein</i> denote the numbers of prot...

Distribution of proteins identified in the <i>P</i>. <i>serpens</i> proteome in terms of the sequence databank species.

Agenor de Castro Moreira dos Santos Júnior (797482)
Carlos André Ornelas Ricart (797488)
Arthur Henriques Pontes (5843666)
Wagner Fontes (573686)
Agnelo Rodrigues de Souza (5843669)
Mariana Souza Castro (4181482)
Marcelo Valle de Sousa (797486)
Beatriz Dolabela de Lima (797487)

October 2018

Distribution of proteins identified in the P. serpens proteome in terms of the sequence databank spe...

Regular patterns for proteome-wide distribution of protein abundance across species.

Fan Zhong
Dong Yang
Yunwei Hao
Chengzhao Lin
Ying Jiang
Wantao Ying
Songfeng Wu
Yunping Zhu
Siqi Liu
Pengyuan Yang
Xiaohong Qian
Fuchu He

A proteome of the bio-entity, including cell, tissue, organ, and organism, consists of proteins of d...

Variation of the normalized abundances (expressed as percentages) of the 23 core genera across the 20 gut metagenomes.

Tarini Shankar Ghosh (194275)
Sourav Sen Gupta (503897)
Tanudeep Bhattacharya (555457)
Deepak Yadav (555458)
Anamitra Barik (555459)
Abhijit Chowdhury (310101)
Bhabatosh Das (555460)
Sharmila S. Mande (176619)
G. Balakrish Nair (200538)

April 2014

<p>Variation of the normalized abundances (expressed as percentages) of the 23 core genera across th...

Average Amino acid frequencies of proteins coded by the mitogenomes of the five Callitettixini species given in percentage.

Jie Liu (15128)
Cuiping Bu (640551)
Benjamin Wipfler (98770)
Aiping Liang (129855)

October 2014

<p>Average Amino acid frequencies of proteins coded by the mitogenomes of the five Callitettixini sp...

Regular Patterns for Proteome-Wide Distribution of Protein Abundance across Species

Fan Zhong (178390)
Dong Yang (141041)
Yunwei Hao (178396)
Chengzhao Lin (178399)
Ying Jiang (5910)
Wantao Ying (178402)
Songfeng Wu (178404)
Yunping Zhu (43570)
Siqi Liu (6569)
Pengyuan Yang (135243)
Xiaohong Qian (178406)
Fuchu He (43571)

March 2012

<div><p>A proteome of the bio-entity, including cell, tissue, organ, and organism, consists of prote...

Relative abundance of protein families found within the ‘secreted’ functional class.

Stephen Lu (14439298)
Monika Danchenko (7325516)
Kevin R. Macaluso (8998328)
José M. C. Ribeiro (8339196)

January 2023

Relative abundance of protein families found within the ‘secreted’ functional class.</p

Average amino acid composition analysis of proteins belonging to different sub-nuclear locations.

Ravindra Kumar (524606)
Sohni Jain (572440)
Bandana Kumari (524605)
Manish Kumar (50435)

June 2014

<p>Average amino acid composition analysis of proteins belonging to different sub-nuclear locations....

Distribution of the change in protein-protein interaction across the phylogeny.

Andrew Schoenrock (518128)
Daniel Burnside (518127)
Houman Moteshareie (3804634)
Sylvain Pitre (65320)
Mohsen Hooshyar (518124)
James R. Green (1730917)
Ashkan Golshani (65328)
Frank Dehne (65321)
Alex Wong (96273)

March 2017

<p>The distribution of γ, which represents the total number of interaction changes (gains or losses)...

The distribution of protein molecule entries (dark gray bars) listed in the Allergome database across different species (light gray bars) by taxonomic grouping (Bacteria, Fungi, Plants and Metazoan).

Nidhi Tyagi (176982)
Edward J Farnell (819903)
Colin M Fitzsimmons (819904)
Stephanie Ryan (810130)
Edridah Tukahebwa (35320)
Rick M Maizels (4092)
David W Dunne (3150)
Janet M Thornton (1101)
Nicholas Furnham (44207)

October 2015

<p>The distribution of protein molecule entries (dark gray bars) listed in the Allergome database ac...

The individual abundance of each of the 11 common proteins found to associate with all AgNPs.

Jonathan H. Shannahan (456095)
Xianyin Lai (456096)
Pu Chun Ke (456097)
Ramakrishna Podila (456098)
Jared M. Brown (456099)
Frank A. Witzmann (430777)

September 2013

<p>The individual abundance of each of the 11 common proteins found to associate with all AgNPs.</p

Distribution of homologous protein cluster sizes (clusters of single proteins excluded) within the <i>Ca.</i> L. asiaticus proteome.

Qian Cong (150388)
Lisa N. Kinch (9774)
Bong-Hyun Kim (80574)
Nick V. Grishin (8941)

July 2012

<p>Distribution of homologous protein cluster sizes (clusters of single proteins excluded) within th...

Equal sampling of proteomes.

Arshan Nasir (517262)
Kyung Mo Kim (409167)
Gustavo Caetano-Anollés (65405)

January 2014

<p>Boxplots comparing the distribution of net gains and losses in 100 random phylogenetic trees for ...

Percentage of liver proteins (over all 329 identified proteins; S1 Table) grouped according to different biological processes.

Samuele Bovo (4182802)
Alessio Di Luca (3181494)
Giuliano Galimberti (5742452)
Stefania Dall’Olio (5742455)
Luca Fontanesi (552501)

September 2018

Percentage of liver proteins (over all 329 identified proteins; S1 Table) grouped according to diffe...

Protein abundance per mRNA for first genes and subsequent genes in the operon.

Nhat H.M. Truong (17921685)
Nam T. Vo (17921688)
Binh T. Nguyen (840607)
Son T. Huynh (17921691)
Hoang D. Nguyen (1687678)

February 2024

Protein abundance per mRNA for first genes and subsequent genes in the operon.</p

Statistics of proteins, PPIs, essential proteins, and proteins annotated by 11 labeled compartments in the global PIN of each species.

Xiaoqing Peng (761384)
Jianxin Wang (35827)
Jun Wang (5906)
Fang-Xiang Wu (39390)
Yi Pan (68170)

June 2015

<p>#Protein, #PPI, #<i>Essential protein</i>, and #<i>Annoted Protein</i> denote the numbers of prot...

Distribution of proteins identified in the <i>P</i>. <i>serpens</i> proteome in terms of the sequence databank species.

Agenor de Castro Moreira dos Santos Júnior (797482)
Carlos André Ornelas Ricart (797488)
Arthur Henriques Pontes (5843666)
Wagner Fontes (573686)
Agnelo Rodrigues de Souza (5843669)
Mariana Souza Castro (4181482)
Marcelo Valle de Sousa (797486)
Beatriz Dolabela de Lima (797487)

October 2018

Distribution of proteins identified in the P. serpens proteome in terms of the sequence databank spe...

Regular patterns for proteome-wide distribution of protein abundance across species.

Fan Zhong
Dong Yang
Yunwei Hao
Chengzhao Lin
Ying Jiang
Wantao Ying
Songfeng Wu
Yunping Zhu
Siqi Liu
Pengyuan Yang
Xiaohong Qian
Fuchu He

A proteome of the bio-entity, including cell, tissue, organ, and organism, consists of proteins of d...

Variation of the normalized abundances (expressed as percentages) of the 23 core genera across the 20 gut metagenomes.

Tarini Shankar Ghosh (194275)
Sourav Sen Gupta (503897)
Tanudeep Bhattacharya (555457)
Deepak Yadav (555458)
Anamitra Barik (555459)
Abhijit Chowdhury (310101)
Bhabatosh Das (555460)
Sharmila S. Mande (176619)
G. Balakrish Nair (200538)

April 2014

<p>Variation of the normalized abundances (expressed as percentages) of the 23 core genera across th...

Average Amino acid frequencies of proteins coded by the mitogenomes of the five Callitettixini species given in percentage.

Jie Liu (15128)
Cuiping Bu (640551)
Benjamin Wipfler (98770)
Aiping Liang (129855)

October 2014

<p>Average Amino acid frequencies of proteins coded by the mitogenomes of the five Callitettixini sp...

Regular Patterns for Proteome-Wide Distribution of Protein Abundance across Species

Fan Zhong (178390)
Dong Yang (141041)
Yunwei Hao (178396)
Chengzhao Lin (178399)
Ying Jiang (5910)
Wantao Ying (178402)
Songfeng Wu (178404)
Yunping Zhu (43570)
Siqi Liu (6569)
Pengyuan Yang (135243)
Xiaohong Qian (178406)
Fuchu He (43571)

March 2012

<div><p>A proteome of the bio-entity, including cell, tissue, organ, and organism, consists of prote...

Relative abundance of protein families found within the ‘secreted’ functional class.

Stephen Lu (14439298)
Monika Danchenko (7325516)
Kevin R. Macaluso (8998328)
José M. C. Ribeiro (8339196)

January 2023

Relative abundance of protein families found within the ‘secreted’ functional class.</p

Average amino acid composition analysis of proteins belonging to different sub-nuclear locations.

Ravindra Kumar (524606)
Sohni Jain (572440)
Bandana Kumari (524605)
Manish Kumar (50435)

June 2014

<p>Average amino acid composition analysis of proteins belonging to different sub-nuclear locations....

Distribution of the change in protein-protein interaction across the phylogeny.

Andrew Schoenrock (518128)
Daniel Burnside (518127)
Houman Moteshareie (3804634)
Sylvain Pitre (65320)
Mohsen Hooshyar (518124)
James R. Green (1730917)
Ashkan Golshani (65328)
Frank Dehne (65321)
Alex Wong (96273)

March 2017

<p>The distribution of γ, which represents the total number of interaction changes (gains or losses)...

The distribution of protein molecule entries (dark gray bars) listed in the Allergome database across different species (light gray bars) by taxonomic grouping (Bacteria, Fungi, Plants and Metazoan).

Nidhi Tyagi (176982)
Edward J Farnell (819903)
Colin M Fitzsimmons (819904)
Stephanie Ryan (810130)
Edridah Tukahebwa (35320)
Rick M Maizels (4092)
David W Dunne (3150)
Janet M Thornton (1101)
Nicholas Furnham (44207)

October 2015

<p>The distribution of protein molecule entries (dark gray bars) listed in the Allergome database ac...

The individual abundance of each of the 11 common proteins found to associate with all AgNPs.

Jonathan H. Shannahan (456095)
Xianyin Lai (456096)
Pu Chun Ke (456097)
Ramakrishna Podila (456098)
Jared M. Brown (456099)
Frank A. Witzmann (430777)

September 2013

<p>The individual abundance of each of the 11 common proteins found to associate with all AgNPs.</p

Distribution of homologous protein cluster sizes (clusters of single proteins excluded) within the <i>Ca.</i> L. asiaticus proteome.

Qian Cong (150388)
Lisa N. Kinch (9774)
Bong-Hyun Kim (80574)
Nick V. Grishin (8941)

July 2012

<p>Distribution of homologous protein cluster sizes (clusters of single proteins excluded) within th...

Equal sampling of proteomes.

Arshan Nasir (517262)
Kyung Mo Kim (409167)
Gustavo Caetano-Anollés (65405)

January 2014

<p>Boxplots comparing the distribution of net gains and losses in 100 random phylogenetic trees for ...

Percentage of liver proteins (over all 329 identified proteins; S1 Table) grouped according to different biological processes.

Samuele Bovo (4182802)
Alessio Di Luca (3181494)
Giuliano Galimberti (5742452)
Stefania Dall’Olio (5742455)
Luca Fontanesi (552501)

September 2018

Percentage of liver proteins (over all 329 identified proteins; S1 Table) grouped according to diffe...