Differential expression of putative non-coding RNA species identified by RNAseq and Rfam analyses.

<p>(A–C) The log₂ of the ratio of abundances of each gene between the indicated conditions [M] plotted against the average log₂ of abundance of that gene in all conditions [A]. For each plot, [M] and [A] values were based on data from three biological replicates from each <i>in vivo</i> and <i>in vitro</i> growth condition. ORFs are marked as dark grey circles. Non-coding RNAs are highlighted in red. Grey regions highlight expression differences greater-than and less-than 4-fold.