<p>The ‘x’ axis represents fold-change of differentially expressed unique reads in different library pairs. The ‘y’ axis represents the number of unique reads (log<sub>10</sub>). Differentially accumulating unique reads within 5-fold difference between pairs are shown in the red region. The blue and green regions represent unique reads that are up- and down-regulated more than 5 fold in the stages, respectively. Library pairs: (A), GC vs. MY; (B) ZO vs. MY; (C) GC vs. ZO.</p
<p>A: Differentially expressed genes at FDR 0.05 (highlighted in red) between non-involuted and invo...
<p>Each circle represents a single contig, with blue circles indicating those contigs that are diffe...
<p>The number after each gene is the Log<sub>2</sub> value (fold change in E1 compared with E0). Red...
<p>The ‘x’ axis represents Log fold-change of differentially expressed genes. The ‘y’ axis represent...
<p>The “X” axis represents fold-change of DEGs in the PT library. The “y” axis represents the number...
<p>Each column represents an experimental condition, and each row represents a gene that is differen...
<p>The numbers of up- and down-regulated genes in comparisons of 135DAS/90DAS, 180DAS/135DAS/, and 1...
<p>All the genes mapped to the reference sequence were examined for their expression differences acr...
<p>To compare the level of gene expression between two libraries, each library was normalized to TPM...
<p>The fold change in the expression of each gene is plotted against mean gene expression. Red point...
<p>‘ALL DEGs’ indicates those unigenes showing differential expression between the two samples, ‘DEG...
<p>(A) Differentially expressed tags at −7 d compared with −35 d. (B) Differentially expressed tags ...
<p>X-axis values correspond to base mean expression values and y-axis values are the log2(fold chang...
<p>Number and Fold change distribution of differentially expressed genes between the SG/RG libraries...
<p>Differentially expressed genes (DEGs) are divided over three groups of absolute log2 fold changes...
<p>A: Differentially expressed genes at FDR 0.05 (highlighted in red) between non-involuted and invo...
<p>Each circle represents a single contig, with blue circles indicating those contigs that are diffe...
<p>The number after each gene is the Log<sub>2</sub> value (fold change in E1 compared with E0). Red...
<p>The ‘x’ axis represents Log fold-change of differentially expressed genes. The ‘y’ axis represent...
<p>The “X” axis represents fold-change of DEGs in the PT library. The “y” axis represents the number...
<p>Each column represents an experimental condition, and each row represents a gene that is differen...
<p>The numbers of up- and down-regulated genes in comparisons of 135DAS/90DAS, 180DAS/135DAS/, and 1...
<p>All the genes mapped to the reference sequence were examined for their expression differences acr...
<p>To compare the level of gene expression between two libraries, each library was normalized to TPM...
<p>The fold change in the expression of each gene is plotted against mean gene expression. Red point...
<p>‘ALL DEGs’ indicates those unigenes showing differential expression between the two samples, ‘DEG...
<p>(A) Differentially expressed tags at −7 d compared with −35 d. (B) Differentially expressed tags ...
<p>X-axis values correspond to base mean expression values and y-axis values are the log2(fold chang...
<p>Number and Fold change distribution of differentially expressed genes between the SG/RG libraries...
<p>Differentially expressed genes (DEGs) are divided over three groups of absolute log2 fold changes...
<p>A: Differentially expressed genes at FDR 0.05 (highlighted in red) between non-involuted and invo...
<p>Each circle represents a single contig, with blue circles indicating those contigs that are diffe...
<p>The number after each gene is the Log<sub>2</sub> value (fold change in E1 compared with E0). Red...