<p>The tree is based on the alignment of 154 CDS that are common to all eight methanotroph genomes used for comparative analysis. Non-matching parts of the alignments were eliminated prior to tree construction. The individual gene alignments were combined into one concatenated alignment. The neighbor-joining tree was constructed using EDGAR. All branches of the phylogenetic tree showed 100% bootstrap support based on 500 replications. See ‘<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074767#s3" target="_blank">Materials and Methods</a>’ for further details.</p
<p>Phylogenetic nodes verified by a maximum likelihood tree are marked with closed circles. The oute...
<p>Bootstrap percentages over 50% from 1000 bootstrap replicates were shown. <i>Saccharomyces parado...
<p>Neighbor-Joining tree based on the concatenation of mt genes, showing the relationship of species...
<p>Phylogenetic trees of 6 Rec-mas strains based on (A) the partial <i>hsp65</i> gene (603 bp) and (...
<p>The phylogenetic tree based on (A) concatenated 7 MLST gene sequences, (B) concatenated 7 MLST ge...
<p>The tree was constructed based on a complete protein sequence alignment of HMGR genes using neigh...
<p>The neighbor-joining tree was calculated from 1,056 concatenated and multiple aligned core genome...
A neighbor-joining tree was constructed based on the alignments of the VviSOS3 genes with p-distance...
<p>The phylogenetic tree was constructed using the neighbor-joining method by MEGA 6.0 based on 1372...
<p>The tree was constructed using the Neighbour-joining method by MEGA 7.0based on 2351 single-copy ...
<p>Trees were constructed using the Neighbor-Joining method using the Tamura-Nei genetic distance mo...
Newick trees provided for phylogenomic and phylogenetic analyses from Ellenbogen et al. (in prep). T...
<p>(A) Neighbor joining trees of the strains based on genetic distances (<i>D</i><sub>A</sub>) of SS...
<p>The tree was obtained by the neighbor-joining algorithm using the MEGA 5.2 program. Bootstrap val...
0). The confidence for each node was determined by bootstrap analysis (1000 repetitions).<p><b>Copyr...
<p>Phylogenetic nodes verified by a maximum likelihood tree are marked with closed circles. The oute...
<p>Bootstrap percentages over 50% from 1000 bootstrap replicates were shown. <i>Saccharomyces parado...
<p>Neighbor-Joining tree based on the concatenation of mt genes, showing the relationship of species...
<p>Phylogenetic trees of 6 Rec-mas strains based on (A) the partial <i>hsp65</i> gene (603 bp) and (...
<p>The phylogenetic tree based on (A) concatenated 7 MLST gene sequences, (B) concatenated 7 MLST ge...
<p>The tree was constructed based on a complete protein sequence alignment of HMGR genes using neigh...
<p>The neighbor-joining tree was calculated from 1,056 concatenated and multiple aligned core genome...
A neighbor-joining tree was constructed based on the alignments of the VviSOS3 genes with p-distance...
<p>The phylogenetic tree was constructed using the neighbor-joining method by MEGA 6.0 based on 1372...
<p>The tree was constructed using the Neighbour-joining method by MEGA 7.0based on 2351 single-copy ...
<p>Trees were constructed using the Neighbor-Joining method using the Tamura-Nei genetic distance mo...
Newick trees provided for phylogenomic and phylogenetic analyses from Ellenbogen et al. (in prep). T...
<p>(A) Neighbor joining trees of the strains based on genetic distances (<i>D</i><sub>A</sub>) of SS...
<p>The tree was obtained by the neighbor-joining algorithm using the MEGA 5.2 program. Bootstrap val...
0). The confidence for each node was determined by bootstrap analysis (1000 repetitions).<p><b>Copyr...
<p>Phylogenetic nodes verified by a maximum likelihood tree are marked with closed circles. The oute...
<p>Bootstrap percentages over 50% from 1000 bootstrap replicates were shown. <i>Saccharomyces parado...
<p>Neighbor-Joining tree based on the concatenation of mt genes, showing the relationship of species...