<p>The P<sub>194-208</sub> synthetic peptide (sequence indicated at the top of the figure and the 11-mer identified by MS is bolded) was digested at different times with ERAP enzymes as follows: ERAP1 at an E/S ratio of 1:800 (panel A), ERAP2 at an E/S ratio of 1:800 (panel B), both ERAP1 and 2 at an E/S ratio of 1:800 (panel C), and both ERAP1 and 2 at an E/S ratio of 1:1600 (panel D). The results depicted as <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0079596#pone-0079596-g002" target="_blank">Figure 2</a> are the mean values of three or four independent experiments.</p
<p>In this experiment, the two replicates of Q7Q7 cells were labeled with D0- and D3-TMAB-NHS, one r...
<p>Peptides observed in multiple experiments were chosen for this analysis. Different peptides are p...
<p>comp ID: sequences assembled with Trinity.<i>contig ID</i> (italic) sequences assembled with Newb...
<p>The N<sub>95-109</sub> synthetic peptide (sequence indicated at the top of the figure and the 9-m...
<p>M<sub>163-177</sub> (panels A-D) and NS2<sub>31-45</sub> (panels E-H) (sequences are indicated at...
<p>M<sub>163-177</sub> substrate (Panel A) was digested overnight with ERAP as follow: ERAP1 at an E...
<p>Samples were analyzed by HPLC reverse phase chromatography. 100 µM peptide with sequence FYWANATR...
<p>Peptide series vary in one position per collection (indicated on the top of each panel; varying a...
<p>The most pronounced preferences found from the library screen in <a href="http://www.plosone.org/...
<p><i>Panels </i><i>A</i><i> and </i><i>B</i>, peptides LSIINFEKL and the variant LSIINFEAL (both at...
<p>A. Alanine scan of N-terminal trimming of the same 10mer peptide by ERAP1. Peptide variants of th...
<p><sup>1</sup>Score-values calculated by Mascot [Score = −10 × Log (<i>p</i>)] express the probabil...
<p>All peptides are based on the same template varying in their N-terminus (indicated as X in the se...
<p>The table summarises the results from three independent replicate experiments (IP1-IP2-IP3) and l...
<p>The relative levels of all peptides identified by MS/MS analysis in the Q7Q111 (A) and Q111Q111 (...
<p>In this experiment, the two replicates of Q7Q7 cells were labeled with D0- and D3-TMAB-NHS, one r...
<p>Peptides observed in multiple experiments were chosen for this analysis. Different peptides are p...
<p>comp ID: sequences assembled with Trinity.<i>contig ID</i> (italic) sequences assembled with Newb...
<p>The N<sub>95-109</sub> synthetic peptide (sequence indicated at the top of the figure and the 9-m...
<p>M<sub>163-177</sub> (panels A-D) and NS2<sub>31-45</sub> (panels E-H) (sequences are indicated at...
<p>M<sub>163-177</sub> substrate (Panel A) was digested overnight with ERAP as follow: ERAP1 at an E...
<p>Samples were analyzed by HPLC reverse phase chromatography. 100 µM peptide with sequence FYWANATR...
<p>Peptide series vary in one position per collection (indicated on the top of each panel; varying a...
<p>The most pronounced preferences found from the library screen in <a href="http://www.plosone.org/...
<p><i>Panels </i><i>A</i><i> and </i><i>B</i>, peptides LSIINFEKL and the variant LSIINFEAL (both at...
<p>A. Alanine scan of N-terminal trimming of the same 10mer peptide by ERAP1. Peptide variants of th...
<p><sup>1</sup>Score-values calculated by Mascot [Score = −10 × Log (<i>p</i>)] express the probabil...
<p>All peptides are based on the same template varying in their N-terminus (indicated as X in the se...
<p>The table summarises the results from three independent replicate experiments (IP1-IP2-IP3) and l...
<p>The relative levels of all peptides identified by MS/MS analysis in the Q7Q111 (A) and Q111Q111 (...
<p>In this experiment, the two replicates of Q7Q7 cells were labeled with D0- and D3-TMAB-NHS, one r...
<p>Peptides observed in multiple experiments were chosen for this analysis. Different peptides are p...
<p>comp ID: sequences assembled with Trinity.<i>contig ID</i> (italic) sequences assembled with Newb...