<p>A) Distances between pairs of selected hydrophobic core residues (Leu37, Phe39, Leu41, Val51, Phe55, Ile65, Phe79, Leu91, Ile94, Leu98) were calculated as the minimum over all possible pairs of non-hydrogen atoms of the side chain. Average values calculated over the 50-ns simulation are reported. B) Time evolution of the solvent accessible surface area (SASA) of Phe55 (black) and Val60 (green) in the F39C mutant (left, top). Time evolution of the SASA of the residue in position 65 in the I65S (yellow), I65T (violet) and I65V (cyan) mutants (left, bottom).</p
<p>A: Average hydrogen bonds lifetimes during the last 6 ns of the simulations of hNaa50p with MLG (...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
<p>Since the binding sites of TmAFP, TmAFP-m1, TmAFP-m2, and TmAFP-m3 respectively include 11, 7, 6,...
<p>A) Water distribution in the wt-hPAH. The protein surface atoms are colored from yellow to blue a...
<p>Variation of solvent accessible surface area (SASA) of nuclear localization signal residues R31, ...
<p>Values of median pho (black bars) and phi (yellow bars) ASA for each residue in the extended stat...
<p>The Lee-Richards–type SASA [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal...
<p>The panels show the number of H-bonds between the L2 and the L4 region residues (backbone and sid...
Assessing the hydropathy properties of molecules, like proteins and chemical compounds, has a crucia...
<p><i>A</i>. Simulations for MA. <i>B</i>. Simulations for NH<sub>3</sub> in wild type AmtB (traject...
<p>Comparison of solvent accessible surface area of hydrophobic C-terminal residues Ile31-Ala42, cha...
<p>(A) Chemical shift perturbation (CSP) analysis to detect residues susceptible to urea denaturatio...
Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, p...
3To whom correspondence should be addressed We have developed a computational method for the de novo...
a<p>SASA was calculated for a given residue using the g_sas tool available in GROMACS version 3.3 <a...
<p>A: Average hydrogen bonds lifetimes during the last 6 ns of the simulations of hNaa50p with MLG (...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
<p>Since the binding sites of TmAFP, TmAFP-m1, TmAFP-m2, and TmAFP-m3 respectively include 11, 7, 6,...
<p>A) Water distribution in the wt-hPAH. The protein surface atoms are colored from yellow to blue a...
<p>Variation of solvent accessible surface area (SASA) of nuclear localization signal residues R31, ...
<p>Values of median pho (black bars) and phi (yellow bars) ASA for each residue in the extended stat...
<p>The Lee-Richards–type SASA [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal...
<p>The panels show the number of H-bonds between the L2 and the L4 region residues (backbone and sid...
Assessing the hydropathy properties of molecules, like proteins and chemical compounds, has a crucia...
<p><i>A</i>. Simulations for MA. <i>B</i>. Simulations for NH<sub>3</sub> in wild type AmtB (traject...
<p>Comparison of solvent accessible surface area of hydrophobic C-terminal residues Ile31-Ala42, cha...
<p>(A) Chemical shift perturbation (CSP) analysis to detect residues susceptible to urea denaturatio...
Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, p...
3To whom correspondence should be addressed We have developed a computational method for the de novo...
a<p>SASA was calculated for a given residue using the g_sas tool available in GROMACS version 3.3 <a...
<p>A: Average hydrogen bonds lifetimes during the last 6 ns of the simulations of hNaa50p with MLG (...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
<p>Since the binding sites of TmAFP, TmAFP-m1, TmAFP-m2, and TmAFP-m3 respectively include 11, 7, 6,...