<p>The statistical scores of the scaled π of <i>japonica/O. rufipogon</i>. The dotted horizontal lines indicate the genome-wide average values of π. <i>Indica</i> is shown in blue, <i>japonica</i> in green, and <i>O. sativa</i> (<i>indica</i> and <i>japonica</i> pooled together) in black. Results of the entire genome are shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0083720#pone.0083720.s005" target="_blank">Figure S5</a>.</p
<p>Panel A: Genome-wide positional distribution of BREd element frequency profile across four dicots...
<p>*Numbers in parenthesis is the total number of SNPs detected in the respective regions in compari...
<p>LD are shown by the <i>r<sup>2</sup></i> statistic, with white for <i>r<sup>2</sup></i> = 0, shad...
<p>The black line shows the scaled π (<i>O. sativa/O. rufipogon</i>), and the gray line shows the sc...
<p>a) Neighbor joining dendogram for the full dataset of accessions analyzed in this study. b) Movin...
<p>a) Average diversity (average number of pairwise differences per kilobasepair) for genes grouped ...
<p>In each figure, red is used for <i>O. rufipogon</i>, blue for <i>indica</i>, and green for <i>jap...
<div><p>(A) Neighbor-joining tree of a high polymorphism gene <i>AK100970</i> with the geographical ...
<p>(a) Admixture analyses showing the proportion of the genome of each individual originating from <...
<p>(A) Genomic sequences of <i>japonica</i> cultivar (Nipponbare) and <i>O. glaberrima</i>, and (B) ...
<div><p>(A) The distribution of nucleotide transition and transversion due to SNPs. The bars between...
We constructed a physical map of O. sativa ssp. japonica cv. ZH11 and compared it and its random sam...
<p>(A) Percentage distribution of R-genes belonging to specific class present on 12 chromosomes of <...
Oryza sativa japonica genome coordinates that had phastcons score greater then 0.8 in BED format. Si...
<p>(a) The <i>Ghd7</i> containing two exons (indicated in gray) and the entire length of the 3923-bp...
<p>Panel A: Genome-wide positional distribution of BREd element frequency profile across four dicots...
<p>*Numbers in parenthesis is the total number of SNPs detected in the respective regions in compari...
<p>LD are shown by the <i>r<sup>2</sup></i> statistic, with white for <i>r<sup>2</sup></i> = 0, shad...
<p>The black line shows the scaled π (<i>O. sativa/O. rufipogon</i>), and the gray line shows the sc...
<p>a) Neighbor joining dendogram for the full dataset of accessions analyzed in this study. b) Movin...
<p>a) Average diversity (average number of pairwise differences per kilobasepair) for genes grouped ...
<p>In each figure, red is used for <i>O. rufipogon</i>, blue for <i>indica</i>, and green for <i>jap...
<div><p>(A) Neighbor-joining tree of a high polymorphism gene <i>AK100970</i> with the geographical ...
<p>(a) Admixture analyses showing the proportion of the genome of each individual originating from <...
<p>(A) Genomic sequences of <i>japonica</i> cultivar (Nipponbare) and <i>O. glaberrima</i>, and (B) ...
<div><p>(A) The distribution of nucleotide transition and transversion due to SNPs. The bars between...
We constructed a physical map of O. sativa ssp. japonica cv. ZH11 and compared it and its random sam...
<p>(A) Percentage distribution of R-genes belonging to specific class present on 12 chromosomes of <...
Oryza sativa japonica genome coordinates that had phastcons score greater then 0.8 in BED format. Si...
<p>(a) The <i>Ghd7</i> containing two exons (indicated in gray) and the entire length of the 3923-bp...
<p>Panel A: Genome-wide positional distribution of BREd element frequency profile across four dicots...
<p>*Numbers in parenthesis is the total number of SNPs detected in the respective regions in compari...
<p>LD are shown by the <i>r<sup>2</sup></i> statistic, with white for <i>r<sup>2</sup></i> = 0, shad...