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The positions of the best SNPs (5×10<sup>−7</sup>) that are highly correlated with each group of linear index.

Sunduimijid Bolormaa (543860)
Jennie E. Pryce (543861)
Antonio Reverter (61185)
Yuandan Zhang (154601)
William Barendse (184999)
Kathryn Kemper (543862)
Bruce Tier (543863)
Keith Savin (371048)
Ben J. Hayes (175151)
Michael E. Goddard (252450)

Publication date

March 2014

DOI

10.1371/journal.pgen.1004198.g008

Abstract

<p>The positions of the best SNPs (5×10<sup>−7</sup>) that are highly correlated with each group of linear index.</p

Extracted data

Topics

Related items

Ranking orders of the candidate reference genes according to their standard deviation calculated Bestkeeper algorithm.

Varinder Singh (361039)
Sunil C. Kaul (186002)
Renu Wadhwa (185998)
Pratap Kumar Pati (701890)

March 2015

<p>Note. Reference genes with SD values greater than 1 are considered as inconsistent and should be ...

Distribution of SNP index association values on chromosomes.

Xiaorong Xing (14725040)
Haidong Liu (1579075)
Jingxiu Ye (5985365)
Yanmei Yao (11791604)
Kaixiang Li (3366128)
Yanling Li (269030)
Dezhi Du (3339450)

March 2023

The abscissas indicate the chromosome names, the colored dots represent the calculated SNP index (or...

The top 10 most variable genes between subjects by stimulation with LPS and the standard deviation (SD) of each.

Penelope A. Bryant (350523)
Gordon K. Smyth (224786)
Roy Robins-Browne (150088)
Nigel Curtis (150095)

February 2013

<p>The top 10 most variable genes between subjects by stimulation with LPS and the standard deviatio...

List of the highest significant SNP from all five analyses and for all four traits.

Iulia Blaj (5848967)
Jens Tetens (132258)
Siegfried Preuß (3565562)
Jörn Bennewitz (3565547)
Georg Thaller (151783)

October 2018

List of the highest significant SNP from all five analyses and for all four traits.</p

Chromosome (Chr), position, candidate genes and proportion of variance (Var) explained by the top 10 SNP windows with higher effects for stayability.

Daniela Barreto Amaral Teixeira (4093762)
Gerardo Alves Fernandes Júnior (4093756)
Danielly Beraldo dos Santos Silva (4093765)
Raphael Bermal Costa (3142068)
Luciana Takada (3160092)
Daniel Gustavo Mansan Gordo (4093759)
Tiago Bresolin (3160125)
Roberto Carvalheiro (523642)
Fernando Baldi (2833280)
Lucia Galvão de Albuquerque (3044559)

June 2017

<p>Chromosome (Chr), position, candidate genes and proportion of variance (Var) explained by the top...

BestKeeper outputs of reference genes ranked by the correlation coefficients (A&C) or by their standard deviation (B&D) for the two datasets, i.e. FS1 (A&B) and CIS (C&D).

Ward De Spiegelaere (116055)
Jutta Dern-Wieloch (715461)
Roswitha Weigel (715462)
Valérie Schumacher (5662843)
Hubert Schorle (15757)
Daniel Nettersheim (444931)
Martin Bergmann (108053)
Ralph Brehm (494774)
Sabine Kliesch (223438)
Linos Vandekerckhove (105574)
Cornelia Fink (715463)

March 2015

<p>BestKeeper outputs of reference genes ranked by the correlation coefficients (A&C) or by their st...

Descriptive statistics for the top SNPs located within each region of interest.

Brandon D. Velie (2608618)
Merina Shrestha (2608627)
Liesbeth Franҫois (2608612)
Anouk Schurink (2608615)
Yohannes G. Tesfayonas (2608624)
Anneleen Stinckens (2608609)
Sarah Blott (2608606)
Bart J. Ducro (2608621)
Sofia Mikko (102256)
Ruth Thomas (17633)
June E. Swinburne (188239)
Marie Sundqvist (2608600)
Susanne Eriksson (283475)
Nadine Buys (2608603)
Gabriella Lindgren (102229)

April 2016

<p>Descriptive statistics for the top SNPs located within each region of interest.</p

The correlation plots shown for the strongest coefficient values in group of A—females, B-males.

Ewa Pisula (462041)
Rafał Kawa (462042)
Dorota Danielewicz (720275)
Wojciech Pisula (151087)

April 2015

<p>The correlation plots shown for the strongest coefficient values in group of A—females, B-males.<...

The Spearman correlation coefficients between the genetic and physical positions of each linkage group on the integrated map.

Jiahui Wang (746367)
Kai Su (548203)
Yinshan Guo (4278640)
Huiyang Xing (4278643)
Yuhui Zhao (297749)
Zhendong Liu (1235259)
Kun Li (277035)
Xiuwu Guo (4278637)

July 2017

<p>The Spearman correlation coefficients between the genetic and physical positions of each linkage ...

Top 10 gene groups ranked by hypergeometric p-value (Bonferroni corrected for 28 tests).

Marc Harper (527878)
Luisa Gronenberg (527879)
James Liao (527880)
Christopher Lee (11627)

February 2014

<p>Top 10 gene groups ranked by hypergeometric p-value (Bonferroni corrected for 28 tests).</p

Most informative SNPs of the PCA.

Ana Campa (65860)
Juan José Ferreira (5884025)

October 2018

Name and x, y coordinates of the 29 SNPs showing the highest contribution to the Dim1 and Dim2 of th...

The top 50 associated SNPs discovered by the individual SNP approach with the corresponding haplotype blocks.

Mohamed N. Saad (765396)
Mai S. Mabrouk (765397)
Ayman M. Eldeib (765398)
Olfat G. Shaker (713168)

December 2018

The top 50 associated SNPs discovered by the individual SNP approach with the corresponding haplotyp...

SNPs identified in GWA studies as being in the top 1% most significant in at least four of the five field sites, with site identified with Y.

Gareth J. Norton (527077)
Alex Douglas (527078)
Brett Lahner (55760)
Elena Yakubova (137097)
Mary Lou Guerinot (11228)
Shannon R. M. Pinson (527079)
Lee Tarpley (76443)
Georgia C. Eizenga (527080)
Steve P. McGrath (115749)
Fang-Jie Zhao (146834)
M. Rafiqul Islam (527081)
Shofiqul Islam (201555)
Guilan Duan (527082)
Yongguan Zhu (527083)
David E. Salt (88328)
Andrew A. Meharg (249762)
Adam H. Price (527084)

February 2014

<p>SNPs identified in GWA studies as being in the top 1% most significant in at least four of the fi...

Positions of SNP genotyped within IL4.

Bernardin Ahouty (4529032)
Mathurin Koffi (301501)
Hamidou Ilboudo (319641)
Gustave Simo (428002)
Enock Matovu (150725)
Julius Mulindwa (252110)
Christiane Hertz-Fowler (243178)
Bruno Bucheton (191144)
Issa Sidibé (323662)
Vincent Jamonneau (256809)
Annette MacLeod (12779)
Harry Noyes (121595)
Simon-Pierre N’Guetta (4529035)

October 2017

<p>SNP with suggestive associations (uncorrected p <0.05) are indicated with a star.</p

Position of the four SNPs that had heterozygosity rates >0.01 in each TLR sequence.

Chi-Hui Cheng (385195)
Yun-Shien Lee (90565)
Chee-Jen Chang (287558)
Tzou-Yien Lin (110829)

March 2013

<p>Position of the four SNPs that had heterozygosity rates >0.01 in each TLR sequence.</p

Ranking orders of the candidate reference genes according to their standard deviation calculated Bestkeeper algorithm.

Varinder Singh (361039)
Sunil C. Kaul (186002)
Renu Wadhwa (185998)
Pratap Kumar Pati (701890)

March 2015

<p>Note. Reference genes with SD values greater than 1 are considered as inconsistent and should be ...

Distribution of SNP index association values on chromosomes.

Xiaorong Xing (14725040)
Haidong Liu (1579075)
Jingxiu Ye (5985365)
Yanmei Yao (11791604)
Kaixiang Li (3366128)
Yanling Li (269030)
Dezhi Du (3339450)

March 2023

The abscissas indicate the chromosome names, the colored dots represent the calculated SNP index (or...

The top 10 most variable genes between subjects by stimulation with LPS and the standard deviation (SD) of each.

Penelope A. Bryant (350523)
Gordon K. Smyth (224786)
Roy Robins-Browne (150088)
Nigel Curtis (150095)

February 2013

<p>The top 10 most variable genes between subjects by stimulation with LPS and the standard deviatio...

List of the highest significant SNP from all five analyses and for all four traits.

Iulia Blaj (5848967)
Jens Tetens (132258)
Siegfried Preuß (3565562)
Jörn Bennewitz (3565547)
Georg Thaller (151783)

October 2018

List of the highest significant SNP from all five analyses and for all four traits.</p

Chromosome (Chr), position, candidate genes and proportion of variance (Var) explained by the top 10 SNP windows with higher effects for stayability.

Daniela Barreto Amaral Teixeira (4093762)
Gerardo Alves Fernandes Júnior (4093756)
Danielly Beraldo dos Santos Silva (4093765)
Raphael Bermal Costa (3142068)
Luciana Takada (3160092)
Daniel Gustavo Mansan Gordo (4093759)
Tiago Bresolin (3160125)
Roberto Carvalheiro (523642)
Fernando Baldi (2833280)
Lucia Galvão de Albuquerque (3044559)

June 2017

<p>Chromosome (Chr), position, candidate genes and proportion of variance (Var) explained by the top...

BestKeeper outputs of reference genes ranked by the correlation coefficients (A&C) or by their standard deviation (B&D) for the two datasets, i.e. FS1 (A&B) and CIS (C&D).

Ward De Spiegelaere (116055)
Jutta Dern-Wieloch (715461)
Roswitha Weigel (715462)
Valérie Schumacher (5662843)
Hubert Schorle (15757)
Daniel Nettersheim (444931)
Martin Bergmann (108053)
Ralph Brehm (494774)
Sabine Kliesch (223438)
Linos Vandekerckhove (105574)
Cornelia Fink (715463)

March 2015

<p>BestKeeper outputs of reference genes ranked by the correlation coefficients (A&C) or by their st...

Descriptive statistics for the top SNPs located within each region of interest.

Brandon D. Velie (2608618)
Merina Shrestha (2608627)
Liesbeth Franҫois (2608612)
Anouk Schurink (2608615)
Yohannes G. Tesfayonas (2608624)
Anneleen Stinckens (2608609)
Sarah Blott (2608606)
Bart J. Ducro (2608621)
Sofia Mikko (102256)
Ruth Thomas (17633)
June E. Swinburne (188239)
Marie Sundqvist (2608600)
Susanne Eriksson (283475)
Nadine Buys (2608603)
Gabriella Lindgren (102229)

April 2016

<p>Descriptive statistics for the top SNPs located within each region of interest.</p

The correlation plots shown for the strongest coefficient values in group of A—females, B-males.

Ewa Pisula (462041)
Rafał Kawa (462042)
Dorota Danielewicz (720275)
Wojciech Pisula (151087)

April 2015

<p>The correlation plots shown for the strongest coefficient values in group of A—females, B-males.<...

The Spearman correlation coefficients between the genetic and physical positions of each linkage group on the integrated map.

Jiahui Wang (746367)
Kai Su (548203)
Yinshan Guo (4278640)
Huiyang Xing (4278643)
Yuhui Zhao (297749)
Zhendong Liu (1235259)
Kun Li (277035)
Xiuwu Guo (4278637)

July 2017

<p>The Spearman correlation coefficients between the genetic and physical positions of each linkage ...

Top 10 gene groups ranked by hypergeometric p-value (Bonferroni corrected for 28 tests).

Marc Harper (527878)
Luisa Gronenberg (527879)
James Liao (527880)
Christopher Lee (11627)

February 2014

<p>Top 10 gene groups ranked by hypergeometric p-value (Bonferroni corrected for 28 tests).</p

Most informative SNPs of the PCA.

Ana Campa (65860)
Juan José Ferreira (5884025)

October 2018

Name and x, y coordinates of the 29 SNPs showing the highest contribution to the Dim1 and Dim2 of th...

The top 50 associated SNPs discovered by the individual SNP approach with the corresponding haplotype blocks.

Mohamed N. Saad (765396)
Mai S. Mabrouk (765397)
Ayman M. Eldeib (765398)
Olfat G. Shaker (713168)

December 2018

The top 50 associated SNPs discovered by the individual SNP approach with the corresponding haplotyp...

SNPs identified in GWA studies as being in the top 1% most significant in at least four of the five field sites, with site identified with Y.

Gareth J. Norton (527077)
Alex Douglas (527078)
Brett Lahner (55760)
Elena Yakubova (137097)
Mary Lou Guerinot (11228)
Shannon R. M. Pinson (527079)
Lee Tarpley (76443)
Georgia C. Eizenga (527080)
Steve P. McGrath (115749)
Fang-Jie Zhao (146834)
M. Rafiqul Islam (527081)
Shofiqul Islam (201555)
Guilan Duan (527082)
Yongguan Zhu (527083)
David E. Salt (88328)
Andrew A. Meharg (249762)
Adam H. Price (527084)

February 2014

<p>SNPs identified in GWA studies as being in the top 1% most significant in at least four of the fi...

Positions of SNP genotyped within IL4.

Bernardin Ahouty (4529032)
Mathurin Koffi (301501)
Hamidou Ilboudo (319641)
Gustave Simo (428002)
Enock Matovu (150725)
Julius Mulindwa (252110)
Christiane Hertz-Fowler (243178)
Bruno Bucheton (191144)
Issa Sidibé (323662)
Vincent Jamonneau (256809)
Annette MacLeod (12779)
Harry Noyes (121595)
Simon-Pierre N’Guetta (4529035)

October 2017

<p>SNP with suggestive associations (uncorrected p <0.05) are indicated with a star.</p

Position of the four SNPs that had heterozygosity rates >0.01 in each TLR sequence.

Chi-Hui Cheng (385195)
Yun-Shien Lee (90565)
Chee-Jen Chang (287558)
Tzou-Yien Lin (110829)

March 2013

<p>Position of the four SNPs that had heterozygosity rates >0.01 in each TLR sequence.</p

Ranking orders of the candidate reference genes according to their standard deviation calculated Bestkeeper algorithm.

Varinder Singh (361039)
Sunil C. Kaul (186002)
Renu Wadhwa (185998)
Pratap Kumar Pati (701890)

March 2015

<p>Note. Reference genes with SD values greater than 1 are considered as inconsistent and should be ...

Distribution of SNP index association values on chromosomes.

Xiaorong Xing (14725040)
Haidong Liu (1579075)
Jingxiu Ye (5985365)
Yanmei Yao (11791604)
Kaixiang Li (3366128)
Yanling Li (269030)
Dezhi Du (3339450)

March 2023

The abscissas indicate the chromosome names, the colored dots represent the calculated SNP index (or...

The top 10 most variable genes between subjects by stimulation with LPS and the standard deviation (SD) of each.

Penelope A. Bryant (350523)
Gordon K. Smyth (224786)
Roy Robins-Browne (150088)
Nigel Curtis (150095)

February 2013

<p>The top 10 most variable genes between subjects by stimulation with LPS and the standard deviatio...