<p>The orientation angle of the bound ligand is defined as the angle between the unit vector normal to the membrane and the unit vector along the dipole of ligand. The averaged curves for three replicates of each system are shown for monomeric CXCL-8 in black, dimeric CXCL-8 in red, and CXCR1_mut in blue, respectively. Error bars of the curves are omitted for figure clarity.</p
<p>The plot shows the tilt angle values for MAG2 in (A) 80 lipids and (B) 120 lipids, PGLa (C), MG-H...
<p>MD simulations were run with WT CD28 starting from a CTLA-4 dimer orientation. (<b>A</b>) The RMS...
<p>Three relative angles are calculated to describe dimer configurations: <i>β</i> describes the pos...
<p>Due to the similar final binding orientations of the three replicates of each system and the figu...
<p>The complex structure is represented as ribbon structure with the N-loop of the ligand colored gr...
<p>Panel A. Orientation distribution for the model (red) with normally distributed dipole polar and ...
We present a physically based treatment of the molecular rotational partition function for the case...
<p>(A) Ligand structures after equilibration: antagonist (yellow) and agonist (purple). Helices repr...
<p>(A) RMSD of S1P<sub>1</sub> TM regions during MD simulations. Apo S1P<sub>1</sub> in black, ML056...
<p>Both ligand and binding site plasticity contributes to changes in the binding mode between the li...
<p>(<b>A</b>) The RMSD (root mean square deviation) of all backbone atoms for the receptor PPARα. (<...
<p>Left panel: depiction of the azimuthal angle, defined as the torsion between 4 C<sub>α</sub> atom...
The top row presents representative simulation snapshots of the NP and lipid head groups for four MU...
<p>(A). Standard deviation of phi and psi angles of the residues of the receptor within 7 Å of ligan...
<p>Orientation (top) and population distribution of the dihedral angle <i>χ</i><sub>2</sub> (bottom)...
<p>The plot shows the tilt angle values for MAG2 in (A) 80 lipids and (B) 120 lipids, PGLa (C), MG-H...
<p>MD simulations were run with WT CD28 starting from a CTLA-4 dimer orientation. (<b>A</b>) The RMS...
<p>Three relative angles are calculated to describe dimer configurations: <i>β</i> describes the pos...
<p>Due to the similar final binding orientations of the three replicates of each system and the figu...
<p>The complex structure is represented as ribbon structure with the N-loop of the ligand colored gr...
<p>Panel A. Orientation distribution for the model (red) with normally distributed dipole polar and ...
We present a physically based treatment of the molecular rotational partition function for the case...
<p>(A) Ligand structures after equilibration: antagonist (yellow) and agonist (purple). Helices repr...
<p>(A) RMSD of S1P<sub>1</sub> TM regions during MD simulations. Apo S1P<sub>1</sub> in black, ML056...
<p>Both ligand and binding site plasticity contributes to changes in the binding mode between the li...
<p>(<b>A</b>) The RMSD (root mean square deviation) of all backbone atoms for the receptor PPARα. (<...
<p>Left panel: depiction of the azimuthal angle, defined as the torsion between 4 C<sub>α</sub> atom...
The top row presents representative simulation snapshots of the NP and lipid head groups for four MU...
<p>(A). Standard deviation of phi and psi angles of the residues of the receptor within 7 Å of ligan...
<p>Orientation (top) and population distribution of the dihedral angle <i>χ</i><sub>2</sub> (bottom)...
<p>The plot shows the tilt angle values for MAG2 in (A) 80 lipids and (B) 120 lipids, PGLa (C), MG-H...
<p>MD simulations were run with WT CD28 starting from a CTLA-4 dimer orientation. (<b>A</b>) The RMS...
<p>Three relative angles are calculated to describe dimer configurations: <i>β</i> describes the pos...