1<p>Total number of segregating sites.</p>2<p>Total number of mutations.</p>3<p>Nucleotide Diversity, average pairwise nucleotide difference per site.</p>4<p>Mutation rate estimated from S.</p>5<p>The average number of pairwise differences per synonymous site.</p>6<p>The average number of pairwise differences per non-synonymous site.</p>7<p>dS and dN were estimated by Kumar method.</p
<p>S: number of polymorphic sites.</p><p>π: nucleotide diversity.</p><p>θ<sub>s</sub>: Watterson's θ...
<p>Dark grey are populations evolved in the benign environment and light grey are the populations ev...
<p><sup>a</sup>Average number of polymorphic sites per locus.</p><p><sup>b</sup>Average nucleotide d...
<p>Population genetic parameters estimated from segregating sites within the MdBV proviral genome (a...
<p>The percentage of variable nucleotide (nt) sites was calculated as the number of variable nt site...
a<p>N – number of chromosomes.</p>b<p>L – total number of sites surveyed.</p>c<p>S – number of segre...
a<p>length of analyzed resequenced region (in kb);</p>b<p>population;</p>c<p>number of segregating s...
<p>Each estimate of Watterson’s theta per basepair (θw/bp) and nucleotide diversity with Juke’s Cant...
<p>All estimates were done after excluding homopolymer sites (HPs) from virus sequenced in 454.</p><...
<p>Diversity indices for all samples including number of individuals (N), number of segregating site...
Theoretical work suggests that data from multiple nuclear loci provide better estimates of populatio...
This doctoral dissertation is composed of three projects and four chapters. Chapter 1 presents the b...
1<p>Per fragment r/m parameter: Estimated ratio of recombination to mutational events per gene fragm...
<p>A) Percent non-R5 virus detected at varying input copy numbers for a non-homogeneous clinical sam...
<p>Four US CMV isolates, (a) BORU93, (b) HORU94, (c) V154NYT85, and (d) AORU93 were used as query se...
<p>S: number of polymorphic sites.</p><p>π: nucleotide diversity.</p><p>θ<sub>s</sub>: Watterson's θ...
<p>Dark grey are populations evolved in the benign environment and light grey are the populations ev...
<p><sup>a</sup>Average number of polymorphic sites per locus.</p><p><sup>b</sup>Average nucleotide d...
<p>Population genetic parameters estimated from segregating sites within the MdBV proviral genome (a...
<p>The percentage of variable nucleotide (nt) sites was calculated as the number of variable nt site...
a<p>N – number of chromosomes.</p>b<p>L – total number of sites surveyed.</p>c<p>S – number of segre...
a<p>length of analyzed resequenced region (in kb);</p>b<p>population;</p>c<p>number of segregating s...
<p>Each estimate of Watterson’s theta per basepair (θw/bp) and nucleotide diversity with Juke’s Cant...
<p>All estimates were done after excluding homopolymer sites (HPs) from virus sequenced in 454.</p><...
<p>Diversity indices for all samples including number of individuals (N), number of segregating site...
Theoretical work suggests that data from multiple nuclear loci provide better estimates of populatio...
This doctoral dissertation is composed of three projects and four chapters. Chapter 1 presents the b...
1<p>Per fragment r/m parameter: Estimated ratio of recombination to mutational events per gene fragm...
<p>A) Percent non-R5 virus detected at varying input copy numbers for a non-homogeneous clinical sam...
<p>Four US CMV isolates, (a) BORU93, (b) HORU94, (c) V154NYT85, and (d) AORU93 were used as query se...
<p>S: number of polymorphic sites.</p><p>π: nucleotide diversity.</p><p>θ<sub>s</sub>: Watterson's θ...
<p>Dark grey are populations evolved in the benign environment and light grey are the populations ev...
<p><sup>a</sup>Average number of polymorphic sites per locus.</p><p><sup>b</sup>Average nucleotide d...