(a)<p>The group of 290 genes significantly downregulated in <i>set2</i>Δ <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0095078#pone.0095078-Tompa1" target="_blank">[18]</a>.</p>(b)<p>The group of 492 genes significantly upregulated in <i>set2</i>Δ <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0095078#pone.0095078-Tompa1" target="_blank">[18]</a>.</p><p>Expression of these groups of genes was tested against the rest of the genome with a Wilcoxon rank sum test. The mean fold change is shown, with p-values<0.05 highlighted in bold, and with arrows denoting up- and downregulation.</p
(A) Strip plots show that many of the top 20 genes upregulated in response to P. aeruginosa are redu...
<p>(a) Schematic of hypothesis testing approach to identify genes with invariant expression (IE) fro...
<p>The down-regulated genes are represented by groups 1 and 2 (see also <a href="http://www.plosone....
(a)<p>The group of 221 genes located within 20 kb of a chromosomal end. Expression of this group of ...
(a)<p>The group of 341 genes that are upregulated 5-fold or more during sporulation <a href="http://...
<p>(A) Lack of Hat1 causes mainly induction of genes in logarithmically growing cells. Each dot corr...
<p>Both strains were grown synchronously on HdB minimal medium supplemented with 22>2.0, <i>p</i>...
(A) Benjamini-Hochberg-corrected p-value versus fold change in footprints for lso2Δ versus WT, as de...
<p>Differential gene expression was ranked by fold change. The most up-regulated genes are shown on ...
<p>(A) GO terms enriched among 2-fold significantly upregulated genes in logarithmically growing <i>...
<p>(A) For genes exhibiting significantly downregulated expression when <i>ash-2</i> was knocked dow...
<p>The fold-change of the genes was relative to their expression in WM. Those genes with a negative ...
<p><i>C</i>: conditions, <b><i>c</i></b>: condition sets, <i>g</i>: genes, <i>s</i>: gene groups, <b...
a<p>For details of classification, see text; partial func/null, partial function with phenotypes mor...
<p>(A) SE38 group vs. PBS group. S95H_NS, S50H_NS and S96_H_NS belong to SE38 group; S32H_NS, S32H_2...
(A) Strip plots show that many of the top 20 genes upregulated in response to P. aeruginosa are redu...
<p>(a) Schematic of hypothesis testing approach to identify genes with invariant expression (IE) fro...
<p>The down-regulated genes are represented by groups 1 and 2 (see also <a href="http://www.plosone....
(a)<p>The group of 221 genes located within 20 kb of a chromosomal end. Expression of this group of ...
(a)<p>The group of 341 genes that are upregulated 5-fold or more during sporulation <a href="http://...
<p>(A) Lack of Hat1 causes mainly induction of genes in logarithmically growing cells. Each dot corr...
<p>Both strains were grown synchronously on HdB minimal medium supplemented with 22>2.0, <i>p</i>...
(A) Benjamini-Hochberg-corrected p-value versus fold change in footprints for lso2Δ versus WT, as de...
<p>Differential gene expression was ranked by fold change. The most up-regulated genes are shown on ...
<p>(A) GO terms enriched among 2-fold significantly upregulated genes in logarithmically growing <i>...
<p>(A) For genes exhibiting significantly downregulated expression when <i>ash-2</i> was knocked dow...
<p>The fold-change of the genes was relative to their expression in WM. Those genes with a negative ...
<p><i>C</i>: conditions, <b><i>c</i></b>: condition sets, <i>g</i>: genes, <i>s</i>: gene groups, <b...
a<p>For details of classification, see text; partial func/null, partial function with phenotypes mor...
<p>(A) SE38 group vs. PBS group. S95H_NS, S50H_NS and S96_H_NS belong to SE38 group; S32H_NS, S32H_2...
(A) Strip plots show that many of the top 20 genes upregulated in response to P. aeruginosa are redu...
<p>(a) Schematic of hypothesis testing approach to identify genes with invariant expression (IE) fro...
<p>The down-regulated genes are represented by groups 1 and 2 (see also <a href="http://www.plosone....