<p><i>Tajima's D, and Fu and Li's D* and F* were calculated using the online Intrapop Neutrality Test calculator (</i><a href="http://wwwabi.snv.jussieu.fr/achaz/neutralitytest.html" target="_blank">http://wwwabi.snv.jussieu.fr/achaz/neutralitytest.html</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0101389#pone.0101389-Achaz1" target="_blank">[<i>38</i>]</a><i>). N = # samples; S = # segregating sites, i.e. polymorphic nucleotides; θ<sub>π</sub> = #mutations (theta) per site from pi (nucleotide diversity); and θ<sub>S</sub> = theta per segregation site. Bold P-values indicate statistical significance based on 100,000 replicates with no recombination, and normalized by their standard deviations. Significant pos...
a<p>S: number of segregating sites. <sup>b</sup>Sin: number of singletons. <sup>c</sup>θ: Watterson ...
<p>Values of haplotype diversity and statistics for testing departures from neutrality (Haplotypes r...
<p>N = number of sequences (molecular level) or individuals (population level) included in analysis....
a<p>length of analyzed resequenced region (in kb);</p>b<p>population;</p>c<p>number of segregating s...
<p>Tajima's D statistic <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.006635...
<p>CR, control region domain I. Number of haplotypes (<i>h</i>), expected range, and Strobeck's S st...
<p>Length, total number of sites in alignment; Taxa, number of taxa; Length (no gaps), total number ...
<p>The Tajima test statistic <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0...
†<p>: multiplied by 10<sup>−2</sup>;</p>‡<p>: not calculated because of lack of polymorphism;</p><p>...
<p><b>Fu & Li's </b><b><i>D*</i></b><b> and </b><b><i>F*</i></b><b>:</b> NS – not significant; NA – ...
<p>Levels of significance: >5% (n.s.), 5% (*), 1% (**), and 0.1% (***), but 5% significance level of...
<p>N = n° of sequences; S = n° of polymorphic sites; H = n° of haplotypes; H<sub>d</sub> = haplotype...
<p>Ha: number of haplotypes.</p><p>S: number of segregating sites.</p><p>π<sub>T</sub>: average numb...
<p>Genetic diversity by locus (A) and by population (B). For both (A) and (B), bars indicate haploty...
<p>(A) Genes and non-coding regions are illustrated in the genomic gene order. Arrows indicate their...
a<p>S: number of segregating sites. <sup>b</sup>Sin: number of singletons. <sup>c</sup>θ: Watterson ...
<p>Values of haplotype diversity and statistics for testing departures from neutrality (Haplotypes r...
<p>N = number of sequences (molecular level) or individuals (population level) included in analysis....
a<p>length of analyzed resequenced region (in kb);</p>b<p>population;</p>c<p>number of segregating s...
<p>Tajima's D statistic <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.006635...
<p>CR, control region domain I. Number of haplotypes (<i>h</i>), expected range, and Strobeck's S st...
<p>Length, total number of sites in alignment; Taxa, number of taxa; Length (no gaps), total number ...
<p>The Tajima test statistic <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0...
†<p>: multiplied by 10<sup>−2</sup>;</p>‡<p>: not calculated because of lack of polymorphism;</p><p>...
<p><b>Fu & Li's </b><b><i>D*</i></b><b> and </b><b><i>F*</i></b><b>:</b> NS – not significant; NA – ...
<p>Levels of significance: >5% (n.s.), 5% (*), 1% (**), and 0.1% (***), but 5% significance level of...
<p>N = n° of sequences; S = n° of polymorphic sites; H = n° of haplotypes; H<sub>d</sub> = haplotype...
<p>Ha: number of haplotypes.</p><p>S: number of segregating sites.</p><p>π<sub>T</sub>: average numb...
<p>Genetic diversity by locus (A) and by population (B). For both (A) and (B), bars indicate haploty...
<p>(A) Genes and non-coding regions are illustrated in the genomic gene order. Arrows indicate their...
a<p>S: number of segregating sites. <sup>b</sup>Sin: number of singletons. <sup>c</sup>θ: Watterson ...
<p>Values of haplotype diversity and statistics for testing departures from neutrality (Haplotypes r...
<p>N = number of sequences (molecular level) or individuals (population level) included in analysis....