<p>Comparison of the computational time required to obtain the reduced order model via balanced realisation (filled circle) and to obtain the approximative model via the FSP method (empty markers), with different, predefined error bounds (). The reaction network analysed is (28). The parameters used for simulation are those of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0103521#pone-0103521-g003" target="_blank">Figure 3</a>. Panels , , and consider 10, 30, and 50 initial molecules for <i>E</i> and <i>S</i> and zero molecules for the rest of the species, respectively.</p
It is demonstrated that the elongation cutoff technique (ECT) substantially speeds up thequantum-che...
<p>Each data point plots the execution time of a particular system size simulated with the basis (2...
<p>Time-dependent concentrations of , , species are reported for reaction in the 30% benchmark sys...
<p>Computational time overhead, as given by (34), required to solve the full CME (diamonds) and to p...
<p>(A) is the transient simulation of gene regulator networks composed of variable number of genes. ...
<p>(a) Simple three-stage model. Species A, B and C are modeled as coupled linear birth-death proces...
<p>Computation Time in the stages of: (a) scaled down data clustering, (b) extend to all data cluste...
Molecular computational methods and their efficiency estimation are discussed in this thesis.Computa...
This PhD thesis deals with the numerical simulation of chemical reaction systems. Chemical reaction ...
The relevance of kinetic Monte Carlo (kMC) algorithms and modeling to obtain and tune detailed molec...
Biochemical reactions play a crucial role and tell us many about the behavior of the biological regu...
The model reduction methodology of computational singular perturba-tion (CSP) is enhanced for chemic...
Random effect in cellular systems is an important topic in systems biology and often simu-lated with...
Four major approaches model the time dependent behavior of chemical reaction systems: ordinary diffe...
<p>Comparison between the computational time taken by cuTauLeaping and COPASI CPU tau-leaping to exe...
It is demonstrated that the elongation cutoff technique (ECT) substantially speeds up thequantum-che...
<p>Each data point plots the execution time of a particular system size simulated with the basis (2...
<p>Time-dependent concentrations of , , species are reported for reaction in the 30% benchmark sys...
<p>Computational time overhead, as given by (34), required to solve the full CME (diamonds) and to p...
<p>(A) is the transient simulation of gene regulator networks composed of variable number of genes. ...
<p>(a) Simple three-stage model. Species A, B and C are modeled as coupled linear birth-death proces...
<p>Computation Time in the stages of: (a) scaled down data clustering, (b) extend to all data cluste...
Molecular computational methods and their efficiency estimation are discussed in this thesis.Computa...
This PhD thesis deals with the numerical simulation of chemical reaction systems. Chemical reaction ...
The relevance of kinetic Monte Carlo (kMC) algorithms and modeling to obtain and tune detailed molec...
Biochemical reactions play a crucial role and tell us many about the behavior of the biological regu...
The model reduction methodology of computational singular perturba-tion (CSP) is enhanced for chemic...
Random effect in cellular systems is an important topic in systems biology and often simu-lated with...
Four major approaches model the time dependent behavior of chemical reaction systems: ordinary diffe...
<p>Comparison between the computational time taken by cuTauLeaping and COPASI CPU tau-leaping to exe...
It is demonstrated that the elongation cutoff technique (ECT) substantially speeds up thequantum-che...
<p>Each data point plots the execution time of a particular system size simulated with the basis (2...
<p>Time-dependent concentrations of , , species are reported for reaction in the 30% benchmark sys...