<p>Computational time overhead, as given by (34), required to solve the full CME (diamonds) and to perform 10<sup>3</sup> SSA runs (squares) as compared to the computational time required in seconds to simulate the reduced order model, as the initial number of molecules for <i>E</i> and <i>S</i> vary from 5 to 100. The parameters values used for simulation are identical to those of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0103521#pone-0103521-g003" target="_blank">Figure 3</a>.</p
<p>(A) The CPU time of the CPM with and without the Act model was measured for simulations of migrat...
<p>The computation times (unit in second) averaging over scenarios having with the same numbers of c...
For systems made up of a small number of molecules, such as a biochemical network in a single cell, ...
<p>Comparison of the computational time required to obtain the reduced order model via balanced real...
<p>(A) is the transient simulation of gene regulator networks composed of variable number of genes. ...
<p>Cutoff length <i>r</i><sub>c</sub> (Å) and damping factor <i>α</i> (Å<sup>−1</sup>) are indicated...
<p>Dependence of Rb model variability on the integration time step used in the simulation. Threshold...
<p>Computation Time in the stages of: (a) scaled down data clustering, (b) extend to all data cluste...
<p>Benchmark showing compute time between a Langevin dynamics simulation and an agent based model of...
<p>Comparison between the computational time taken by cuTauLeaping and COPASI CPU tau-leaping to exe...
The final authenticated publication is available online at https://doi.org/10.1007/978-3-030-17872-7...
The Shuffled Complex Evolution (SCE-UA) method has been widely applied for calibration of rainfall-r...
Fröhlich et al., 2018 model, 200 simulations with 1, 2, 5, 12, 28, 64, 147, 337, 775, 1780, 4088 opt...
In this paper we examine the different formulations of Gillespie's stochastic simulation algorithm (...
<p>Computational times, in seconds (rounded unless less than 1 second), for the four methods of the ...
<p>(A) The CPU time of the CPM with and without the Act model was measured for simulations of migrat...
<p>The computation times (unit in second) averaging over scenarios having with the same numbers of c...
For systems made up of a small number of molecules, such as a biochemical network in a single cell, ...
<p>Comparison of the computational time required to obtain the reduced order model via balanced real...
<p>(A) is the transient simulation of gene regulator networks composed of variable number of genes. ...
<p>Cutoff length <i>r</i><sub>c</sub> (Å) and damping factor <i>α</i> (Å<sup>−1</sup>) are indicated...
<p>Dependence of Rb model variability on the integration time step used in the simulation. Threshold...
<p>Computation Time in the stages of: (a) scaled down data clustering, (b) extend to all data cluste...
<p>Benchmark showing compute time between a Langevin dynamics simulation and an agent based model of...
<p>Comparison between the computational time taken by cuTauLeaping and COPASI CPU tau-leaping to exe...
The final authenticated publication is available online at https://doi.org/10.1007/978-3-030-17872-7...
The Shuffled Complex Evolution (SCE-UA) method has been widely applied for calibration of rainfall-r...
Fröhlich et al., 2018 model, 200 simulations with 1, 2, 5, 12, 28, 64, 147, 337, 775, 1780, 4088 opt...
In this paper we examine the different formulations of Gillespie's stochastic simulation algorithm (...
<p>Computational times, in seconds (rounded unless less than 1 second), for the four methods of the ...
<p>(A) The CPU time of the CPM with and without the Act model was measured for simulations of migrat...
<p>The computation times (unit in second) averaging over scenarios having with the same numbers of c...
For systems made up of a small number of molecules, such as a biochemical network in a single cell, ...