<p>data sets = number of data sets in which the regulator shows significant correlation between its own aCGH and expression, % Containing = percentage of data sets which, when analysed <i>individually</i> predict at least one of the targets that are predicted by the <i>meta-analysis</i>, % Enriched = percentage of data sets in which the gene-set of targets that are predicted by the <i>meta-analysis</i> has significant enrichment in the individual data sets' ranked lists of genes, TF = Transcription Factor.</p
<p>Gene sets with an FDR <5% were included in this analysis. SIZE indicates the number of genes in b...
<p><b>(a)</b> In the <i>LPS</i> data set, average regulatory effect of the top candidates (<i>y</i>-...
Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain sp...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Genes have been grouped according to the number of data sets in which they displayed significant ...
<p>Predicted gene regulations are classified into four groups depending on the label of the regulato...
BACKGROUND: Gene regulatory relationships can be inferred using matched array comparative genomics a...
<p>For the 30 data sets (a) enrichment scores and (b) average B-H adjusted <i>p</i>-values of enrich...
<p>Upper panel: The <i>E</i>. <i>coli</i> regulatory meta-network used contains 197 TFs, exhibiting ...
Background: Conventional wisdom holds that, owing to the dominance of features such as chromatin lev...
<p>This box plot displays the Spearman rank correlation between the predicted and the actual held-ou...
<p>For each of six datasets and for each type of regulation gene ranking procedure was performed and...
<p><b>A</b>) The list of co-regulated genes was determined for each gene using the Individual and Gr...
This project is an investigation of whether analysing subsets of time series gene expression data ca...
<p>Gene sets with an FDR <5% were included in this analysis. SIZE indicates the number of genes in b...
<p><b>(a)</b> In the <i>LPS</i> data set, average regulatory effect of the top candidates (<i>y</i>-...
Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain sp...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Genes have been grouped according to the number of data sets in which they displayed significant ...
<p>Predicted gene regulations are classified into four groups depending on the label of the regulato...
BACKGROUND: Gene regulatory relationships can be inferred using matched array comparative genomics a...
<p>For the 30 data sets (a) enrichment scores and (b) average B-H adjusted <i>p</i>-values of enrich...
<p>Upper panel: The <i>E</i>. <i>coli</i> regulatory meta-network used contains 197 TFs, exhibiting ...
Background: Conventional wisdom holds that, owing to the dominance of features such as chromatin lev...
<p>This box plot displays the Spearman rank correlation between the predicted and the actual held-ou...
<p>For each of six datasets and for each type of regulation gene ranking procedure was performed and...
<p><b>A</b>) The list of co-regulated genes was determined for each gene using the Individual and Gr...
This project is an investigation of whether analysing subsets of time series gene expression data ca...
<p>Gene sets with an FDR <5% were included in this analysis. SIZE indicates the number of genes in b...
<p><b>(a)</b> In the <i>LPS</i> data set, average regulatory effect of the top candidates (<i>y</i>-...
Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain sp...