<p>This box plot displays the Spearman rank correlation between the predicted and the actual held-out genes in 10-fold cross- validation (CV) averaged across all the samples. The full model that uses all features was compared with the partial models that lack one of the regulator groups: CNV (copy number variation), DM (DNA methylation), TFs, miRNAs, RBPs.</p
<p>The expression data are obtained from the Rosetta Inpharmatics and ncbi omnibus, and integrated i...
<p>Boxplots of the Spearman correlation coefficients resulting from one hundred 5× cross-validation ...
<p>miRNAs up- or down-regulated by 40% or more relative to controls (Experiment 1). Those showing si...
<p>Number of significant models, scaled mean squared prediction error from cross-validation (cv-SMSE...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Genes have been grouped according to the number of data sets in which they displayed significant ...
<p>For the 30 data sets (a) enrichment scores and (b) average B-H adjusted <i>p</i>-values of enrich...
<p><b>A</b>. The mRNA expression of gene () is modelled as a function of the following input variab...
<p>For a TF binding motif, we search for all its instances in the genome. For each cell line, we cal...
Names have been shortened by removing the “bioseq2” prefix for all of them. (A) Inter-replicate agre...
<p>data sets = number of data sets in which the regulator shows significant correlation between it...
Rank correlation between the model system-specific gene rankings as measured by the Spearman’s rho c...
(A) Comparison of predictive performance for each gene (R2) between each pair of populations. Predic...
<p>A) Gene expression values. B) Gene expression values predicted from miRNA expression. C) Correlat...
<p>The expression data are obtained from the Rosetta Inpharmatics and ncbi omnibus, and integrated i...
<p>Boxplots of the Spearman correlation coefficients resulting from one hundred 5× cross-validation ...
<p>miRNAs up- or down-regulated by 40% or more relative to controls (Experiment 1). Those showing si...
<p>Number of significant models, scaled mean squared prediction error from cross-validation (cv-SMSE...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Chr = Chromosome, Locus = Gene locus, <i>p</i>-value = B-H adjusted <i>p</i>-value, N = n...
<p>Genes have been grouped according to the number of data sets in which they displayed significant ...
<p>For the 30 data sets (a) enrichment scores and (b) average B-H adjusted <i>p</i>-values of enrich...
<p><b>A</b>. The mRNA expression of gene () is modelled as a function of the following input variab...
<p>For a TF binding motif, we search for all its instances in the genome. For each cell line, we cal...
Names have been shortened by removing the “bioseq2” prefix for all of them. (A) Inter-replicate agre...
<p>data sets = number of data sets in which the regulator shows significant correlation between it...
Rank correlation between the model system-specific gene rankings as measured by the Spearman’s rho c...
(A) Comparison of predictive performance for each gene (R2) between each pair of populations. Predic...
<p>A) Gene expression values. B) Gene expression values predicted from miRNA expression. C) Correlat...
<p>The expression data are obtained from the Rosetta Inpharmatics and ncbi omnibus, and integrated i...
<p>Boxplots of the Spearman correlation coefficients resulting from one hundred 5× cross-validation ...
<p>miRNAs up- or down-regulated by 40% or more relative to controls (Experiment 1). Those showing si...
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