Detailed annotation information for Prochlorococcus genomes

proGenomes: A resource for consistent functional and taxonomic annotations of prokaryotic genomes

Mende, Daniel R.
Letunic, Ivica
Huerta-Cepas, Jaime
Li, Simone S.
Forslund, Kristoffer
Sunagawa, Shinichi
Bork, Peer

January 2017

The availability of microbial genomes has opened many new avenues of research within microbiology. T...

Table-2-list-genomes-with-proteins-and-transcripts.csv

Luc Cornet (4716996)

November 2022

List of selected protist genomes for which protein and transcript data were used for the annotation....

The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 islated from bacteria of the wheat rhizosphere

Tauch, A.
Schneiker, S.
Selbitschka, W.
PÜhler, A.
Overbeek, van, L.S.
Smalla, K.
Thomas, C.M.
Bailey, M.J.
Forney, L.J.
Weightman, A.
Ceglowski, P.
Pembroke, T.
Tietze, E.
Schröder, G.
Lanka, E.
Elsas, van, J.D.

January 2002

The flood of sequence data resulting from the large number of current genome projects has increased ...

Prochlorococcus genomes and cluster of orthologous groups of proteins (COGs)

Steven J. Biller (3261984)
Paul M. Berube (3313821)
Jessie W. Berta-Thompson (3313824)
Libusha Kelly (61267)
Sara E. Roggensack (789029)
Lana Awad (3313830)
Kathryn H. Roache-Johnson (3313827)
Huiming Ding (196523)
Stephen J. Giovannoni (208499)
Lisa R. Moore (3313833)
Sallie W. Chisholm (53467)

November 2016

Cluster assignments and annotation metadata for genes in the newly sequenced Prochlorococcus genomes...

Prochlorococcus genome sequences

Steven J. Biller (3261984)
Paul M. Berube (3313821)
Jessie W. Berta-Thompson (3313824)
Libusha Kelly (61267)
Sara E. Roggensack (789029)
Lana Awad (3313830)
Kathryn H. Roache-Johnson (3313827)
Huiming Ding (196523)
Stephen J. Giovannoni (208499)
Lisa R. Moore (3313833)
Sallie W. Chisholm (53467)

November 2016

Set of nucleotide FASTA-formatted files containing the new Prochlorococcus genome assemblies describ...

All predicted Prochlorococcus ORFs, nucleotide sequence

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2014

Set of nucleotide FASTA files containing the predicted nucleotide sequence for all open reading fram...

All predicted Prochlorococcus ORFs, amino acid sequence

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2014

Set of protein FASTA files containing the predicted amino acid translation for all ORFs in each geno...

Datasets supporting draft genomes of three closely related low light-adapted Prochlorococcus

Elaina Thomas (9142130)
Jessie Berta-Thompson (10710753)
Andres Cubillos-Ruiz (9142147)
Thomas Hackl (1981243)
Jamie W Becker (4984928)
Allison Coe (3261981)
Steven J. Biller (3261984)
Sallie W Chisholm (8006327)

July 2020

The datasets provided here support the building of the P1344, P1361, and P1363 Prochlorococcus genom...

Data from: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2015

The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the...

Genome assembly and annotations of <i>Coronaproctus castanopsis</i> (Coccoidea: Monophlebidae)

Yi-Xin Huang (16987611)

October 2023

Genome assembly and annotations of Coronaproctus castanopsis (Coccoidea: Monophlebidae)</p

31 Prochlorococcus Isolate Genomes

A. Murat Eren (696829)

June 2018

Contigs databases for 31 Prochlorococcus isolate genomes.<div><br></div><div>These genomes used in t...

Prochlorococcus marinus digital microbe

Veseli, Iva

May 2023

This is the digital microbe describing the model organism Prochlorococcus marinus MIT 9301. The data...

Genomics of Cryptococcus neoformans, Supplementary Table 1

Philip Ashton (402326)

March 2019

Genomics of Cryptococcus neoformans, Supplementary Table 1 Associated with https://www.biorxiv.org/c...

Supplementary Information for the evolution of the plastid genomes in diatoms

Yu, Mengjie
Ashworth, Matt P.
Hajrah, Nahid H.
Khiyami, Mohammad A.
Sabir, Mumdooh J.
Alhebshi, Alawiah M.
Al-Malki, Abdulrahman L.
Sabir, Jamal S. M.
Theriot, Edward C.
Jansen, Robert K.

January 2018

This file contains supplementary information for the book chapter. Table A to G contains additional ...

Lactobacillus kunkeei MP2 Genome

Juan Ugalde (813572)

October 2015

<p>Supplementary data containing tables and raw annotation files for the genome of Lactobacillus kun...

proGenomes: A resource for consistent functional and taxonomic annotations of prokaryotic genomes

Mende, Daniel R.
Letunic, Ivica
Huerta-Cepas, Jaime
Li, Simone S.
Forslund, Kristoffer
Sunagawa, Shinichi
Bork, Peer

January 2017

The availability of microbial genomes has opened many new avenues of research within microbiology. T...

Table-2-list-genomes-with-proteins-and-transcripts.csv

Luc Cornet (4716996)

November 2022

List of selected protist genomes for which protein and transcript data were used for the annotation....

The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 islated from bacteria of the wheat rhizosphere

Tauch, A.
Schneiker, S.
Selbitschka, W.
PÜhler, A.
Overbeek, van, L.S.
Smalla, K.
Thomas, C.M.
Bailey, M.J.
Forney, L.J.
Weightman, A.
Ceglowski, P.
Pembroke, T.
Tietze, E.
Schröder, G.
Lanka, E.
Elsas, van, J.D.

January 2002

The flood of sequence data resulting from the large number of current genome projects has increased ...

Prochlorococcus genomes and cluster of orthologous groups of proteins (COGs)

Steven J. Biller (3261984)
Paul M. Berube (3313821)
Jessie W. Berta-Thompson (3313824)
Libusha Kelly (61267)
Sara E. Roggensack (789029)
Lana Awad (3313830)
Kathryn H. Roache-Johnson (3313827)
Huiming Ding (196523)
Stephen J. Giovannoni (208499)
Lisa R. Moore (3313833)
Sallie W. Chisholm (53467)

November 2016

Cluster assignments and annotation metadata for genes in the newly sequenced Prochlorococcus genomes...

Prochlorococcus genome sequences

Steven J. Biller (3261984)
Paul M. Berube (3313821)
Jessie W. Berta-Thompson (3313824)
Libusha Kelly (61267)
Sara E. Roggensack (789029)
Lana Awad (3313830)
Kathryn H. Roache-Johnson (3313827)
Huiming Ding (196523)
Stephen J. Giovannoni (208499)
Lisa R. Moore (3313833)
Sallie W. Chisholm (53467)

November 2016

Set of nucleotide FASTA-formatted files containing the new Prochlorococcus genome assemblies describ...

All predicted Prochlorococcus ORFs, nucleotide sequence

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2014

Set of nucleotide FASTA files containing the predicted nucleotide sequence for all open reading fram...

All predicted Prochlorococcus ORFs, amino acid sequence

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2014

Set of protein FASTA files containing the predicted amino acid translation for all ORFs in each geno...

Datasets supporting draft genomes of three closely related low light-adapted Prochlorococcus

Elaina Thomas (9142130)
Jessie Berta-Thompson (10710753)
Andres Cubillos-Ruiz (9142147)
Thomas Hackl (1981243)
Jamie W Becker (4984928)
Allison Coe (3261981)
Steven J. Biller (3261984)
Sallie W Chisholm (8006327)

July 2020

The datasets provided here support the building of the P1344, P1361, and P1363 Prochlorococcus genom...

Data from: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2015

The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the...

Genome assembly and annotations of <i>Coronaproctus castanopsis</i> (Coccoidea: Monophlebidae)

Yi-Xin Huang (16987611)

October 2023

Genome assembly and annotations of Coronaproctus castanopsis (Coccoidea: Monophlebidae)</p

31 Prochlorococcus Isolate Genomes

A. Murat Eren (696829)

June 2018

Contigs databases for 31 Prochlorococcus isolate genomes.<div><br></div><div>These genomes used in t...

Prochlorococcus marinus digital microbe

Veseli, Iva

May 2023

This is the digital microbe describing the model organism Prochlorococcus marinus MIT 9301. The data...

Genomics of Cryptococcus neoformans, Supplementary Table 1

Philip Ashton (402326)

March 2019

Genomics of Cryptococcus neoformans, Supplementary Table 1 Associated with https://www.biorxiv.org/c...

Supplementary Information for the evolution of the plastid genomes in diatoms

Yu, Mengjie
Ashworth, Matt P.
Hajrah, Nahid H.
Khiyami, Mohammad A.
Sabir, Mumdooh J.
Alhebshi, Alawiah M.
Al-Malki, Abdulrahman L.
Sabir, Jamal S. M.
Theriot, Edward C.
Jansen, Robert K.

January 2018

This file contains supplementary information for the book chapter. Table A to G contains additional ...

Lactobacillus kunkeei MP2 Genome

Juan Ugalde (813572)

October 2015

<p>Supplementary data containing tables and raw annotation files for the genome of Lactobacillus kun...

proGenomes: A resource for consistent functional and taxonomic annotations of prokaryotic genomes

Mende, Daniel R.
Letunic, Ivica
Huerta-Cepas, Jaime
Li, Simone S.
Forslund, Kristoffer
Sunagawa, Shinichi
Bork, Peer

January 2017

The availability of microbial genomes has opened many new avenues of research within microbiology. T...

Table-2-list-genomes-with-proteins-and-transcripts.csv

Luc Cornet (4716996)

November 2022

List of selected protist genomes for which protein and transcript data were used for the annotation....

The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 islated from bacteria of the wheat rhizosphere

Tauch, A.
Schneiker, S.
Selbitschka, W.
PÜhler, A.
Overbeek, van, L.S.
Smalla, K.
Thomas, C.M.
Bailey, M.J.
Forney, L.J.
Weightman, A.
Ceglowski, P.
Pembroke, T.
Tietze, E.
Schröder, G.
Lanka, E.
Elsas, van, J.D.

January 2002

The flood of sequence data resulting from the large number of current genome projects has increased ...

Detailed annotation information for Prochlorococcus genomes

Abstract

Extracted data

Detailed annotation information for Prochlorococcus genomes

Abstract

Extracted data

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