Supplementary Information for the evolution of the plastid genomes in diatoms

Additional Supplemental Information (Figs. S4-25) by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S (via Mendeley Data)

April 2017

Additional supplemental information (Figs. S4-25) to the manuscript: 'The new red algal subphylum Pr...

Table_1_Comparative analysis of organelle genomes provides conflicting evidence between morphological similarity and phylogenetic relationship in diatoms.xlsx

YuJin Jeong (11248701)
JunMo Lee (3493265)

January 2024

Diatoms (Bacillariophyta) are abundant phytoplankton groups in marine environments, which contribute...

Additional file 4: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pediastrum duplex strain PL0501b, GenBank KR026340. Drawn b...

Data from: Evolution of the plastid genomes in diatoms

Yu, Mengjie
Ashworth, Matt P.
Hajrah, Nahid H.
Khiyami, Mohammad A.
Sabir, Mumdooh J.
Alhebshi, Alawiah M.
Al-Malki, Abdulrahman L.
Sabir, Jamal S. M.
Theriot, Edward C.
Jansen, Robert K.

January 2018

Diatoms are a monophyletic group of eukaryotic, single-celled heterokont algae. Despite years of phy...

Data from: Evolution of the plastid genomes in diatoms

Yu, Mengjie
Ashworth, Matt P.
Hajrah, Nahid H.
Khiyami, Mohammad A.
Sabir, Mumdooh J.
Alhebshi, Alawiah M.
Al-Malki, Abdulrahman L.
Sabir, Jamal S. M.
Theriot, Edward C.
Jansen, Robert K.

Diatoms are a monophyletic group of eukaryotic, single-celled heterokont algae. Despite years of phy...

Additional file 2: of Evolution of plastid genomes of Holcoglossum (Orchidaceae) with recent radiation

Zhang-Hai Li (6405374)
Xiao Ma (411875)
De-Yi Wang (294611)
Yun-Xia Li (539070)
Cheng-Wang Wang (6405377)
Xiao-Hua Jin (517949)

February 2019

Table S1. List of genes identified in the plastid genomes of Holcoglossum. (DOCX 26 kb

Additional file 6: Figure S17. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

Structural comparison of brown lineage plastid genomes based on MUMmerplot. Figure S18. Structural c...

Additional file 1: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Stauridium tetras strain ACOI84, GenBank KR026341. Drawn by...

Additional file 5: Figure S16. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

Structural comparison of Geraniales plastid genomes based on MUMmerplot. (PDF 198 kb

Additional Supplemental Information (Fig. S4-25) for 'The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known' by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S

Additional supplemental information (Fig. S4-25) for the manuscript: 'The New Red Algal Subphylum Pr...

Table_2_Evolution of Complex Thallus Alga: Genome Sequencing of Saccharina japonica.DOCX

Tao Liu (10785)
Xumin Wang (154984)
Guoliang Wang (440255)
Shangang Jia (5469524)
Guiming Liu (172437)
Guangle Shan (4236586)
Shan Chi (154986)
Jing Zhang (23775)
Yahui Yu (5464109)
Ting Xue (291379)
Jun Yu (5904)

May 2019

Saccharina, as one of the most important brown algae (Phaeophyceae) with multicellular thallus, has ...

Additional file 8: Figure S23. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

ML tree based on concatenated 60 plastid genes from Archaeplastida and their cyanobacterial homologs...

Additional Supplemental Information (Fig. S4-25) for 'The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known' by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S (via Mendeley Data)

February 2019

Additional supplemental information (Fig. S4-25) for the manuscript: 'The New Red Algal Subphylum Pr...

Additional Supplemental Information (Fig. S4-25) for 'The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known' by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S

Additional supplemental information (Fig. S4-25) for the manuscript: 'The New Red Algal Subphylum Pr...

Additional file 8: of Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance

S. Staton (3566690)
John Burke (578290)

August 2015

Shows published genome size estimates and genome size observations determined by the method describe...

Additional Supplemental Information (Figs. S4-25) by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S (via Mendeley Data)

April 2017

Additional supplemental information (Figs. S4-25) to the manuscript: 'The new red algal subphylum Pr...

Table_1_Comparative analysis of organelle genomes provides conflicting evidence between morphological similarity and phylogenetic relationship in diatoms.xlsx

YuJin Jeong (11248701)
JunMo Lee (3493265)

January 2024

Diatoms (Bacillariophyta) are abundant phytoplankton groups in marine environments, which contribute...

Additional file 4: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pediastrum duplex strain PL0501b, GenBank KR026340. Drawn b...

Data from: Evolution of the plastid genomes in diatoms

Yu, Mengjie
Ashworth, Matt P.
Hajrah, Nahid H.
Khiyami, Mohammad A.
Sabir, Mumdooh J.
Alhebshi, Alawiah M.
Al-Malki, Abdulrahman L.
Sabir, Jamal S. M.
Theriot, Edward C.
Jansen, Robert K.

January 2018

Diatoms are a monophyletic group of eukaryotic, single-celled heterokont algae. Despite years of phy...

Data from: Evolution of the plastid genomes in diatoms

Yu, Mengjie
Ashworth, Matt P.
Hajrah, Nahid H.
Khiyami, Mohammad A.
Sabir, Mumdooh J.
Alhebshi, Alawiah M.
Al-Malki, Abdulrahman L.
Sabir, Jamal S. M.
Theriot, Edward C.
Jansen, Robert K.

Diatoms are a monophyletic group of eukaryotic, single-celled heterokont algae. Despite years of phy...

Additional file 2: of Evolution of plastid genomes of Holcoglossum (Orchidaceae) with recent radiation

Zhang-Hai Li (6405374)
Xiao Ma (411875)
De-Yi Wang (294611)
Yun-Xia Li (539070)
Cheng-Wang Wang (6405377)
Xiao-Hua Jin (517949)

February 2019

Table S1. List of genes identified in the plastid genomes of Holcoglossum. (DOCX 26 kb

Additional file 6: Figure S17. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

Structural comparison of brown lineage plastid genomes based on MUMmerplot. Figure S18. Structural c...

Additional file 1: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Stauridium tetras strain ACOI84, GenBank KR026341. Drawn by...

Additional file 5: Figure S16. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

Structural comparison of Geraniales plastid genomes based on MUMmerplot. (PDF 198 kb

Additional Supplemental Information (Fig. S4-25) for 'The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known' by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S

Additional supplemental information (Fig. S4-25) for the manuscript: 'The New Red Algal Subphylum Pr...

Table_2_Evolution of Complex Thallus Alga: Genome Sequencing of Saccharina japonica.DOCX

Tao Liu (10785)
Xumin Wang (154984)
Guoliang Wang (440255)
Shangang Jia (5469524)
Guiming Liu (172437)
Guangle Shan (4236586)
Shan Chi (154986)
Jing Zhang (23775)
Yahui Yu (5464109)
Ting Xue (291379)
Jun Yu (5904)

May 2019

Saccharina, as one of the most important brown algae (Phaeophyceae) with multicellular thallus, has ...

Additional file 8: Figure S23. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

ML tree based on concatenated 60 plastid genes from Archaeplastida and their cyanobacterial homologs...

Additional Supplemental Information (Fig. S4-25) for 'The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known' by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S (via Mendeley Data)

February 2019

Additional supplemental information (Fig. S4-25) for the manuscript: 'The New Red Algal Subphylum Pr...

Additional Supplemental Information (Fig. S4-25) for 'The New Red Algal Subphylum Proteorhodophytina Comprises the Largest and Most Divergent Plastid Genomes Known' by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S

Additional supplemental information (Fig. S4-25) for the manuscript: 'The New Red Algal Subphylum Pr...

Additional file 8: of Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance

S. Staton (3566690)
John Burke (578290)

August 2015

Shows published genome size estimates and genome size observations determined by the method describe...

Additional Supplemental Information (Figs. S4-25) by Muñoz-Gómez, S. A. et al. (2017)

Muñoz-Gómez, S (via Mendeley Data)

April 2017

Additional supplemental information (Figs. S4-25) to the manuscript: 'The new red algal subphylum Pr...

Table_1_Comparative analysis of organelle genomes provides conflicting evidence between morphological similarity and phylogenetic relationship in diatoms.xlsx

YuJin Jeong (11248701)
JunMo Lee (3493265)

January 2024

Diatoms (Bacillariophyta) are abundant phytoplankton groups in marine environments, which contribute...

Additional file 4: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pediastrum duplex strain PL0501b, GenBank KR026340. Drawn b...

Supplementary Information for the evolution of the plastid genomes in diatoms

Abstract

Extracted data

Supplementary Information for the evolution of the plastid genomes in diatoms

Abstract

Extracted data

Topics

Related items

Topics

Related items