Phylogenetic tree of Cryptosporidium spp. constructed based on partial SSU rRNA nucleotide sequence.

Rongsheng Mi (462201)
Xiaojuan Wang (105141)
Yan Huang (46805)
Peng Zhou (116747)
Yuxuan Liu (349237)
Yongjun Chen (577347)
Jun Chen (4238)
Wei Zhu (23646)
Zhaoguo Chen (462204)

Publication date

October 2014

DOI

10.1371/journal.pone.0111164.g001

Abstract

The phylogenetic tree was constructed using the neighbor-joining algorithm of the phylogeny program of MEGA 6.0. Bootstrap method via 1000 pseudo replicates was used to assess the reliability of the tree, and bootstrap value more than 50% were shown. ▴: Partial sequences obtained in the present study; CM: The sample from Chongming County; FX: The sample from Fengxian District; GA: The sample from Gongan County; HZ: The sample from Huizhou City; JS: The sample from Jinshan District; TZ: The sample from Tengzhou City.</p

Extracted data

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Data Protection

Phylogenetic tree of Cryptosporidium spp. constructed based on partial SSU rRNA nucleotide sequence.

Rongsheng Mi (462201)
Xiaojuan Wang (105141)
Yan Huang (46805)
Peng Zhou (116747)
Yuxuan Liu (349237)
Yongjun Chen (577347)
Jun Chen (4238)
Wei Zhu (23646)
Zhaoguo Chen (462204)

Open link

Publication date

October 2014

DOI

10.1371/journal.pone.0111164.g001

Abstract

Extracted data

Zhenyue Lin (618780)
Shiqiang Xu (618781)
Youxiong Que (505294)
Jihua Wang (539287)
Jack C. Comstock (618782)
Jinjin Wei (618783)
Per H. McCord (618784)
Baoshan Chen (41406)
Rukai Chen (618785)
Muqing Zhang (481513)

August 2014

A phylogenetic tree was constructed on the 101 sugarcane isolates of Fusarium species comp...

Phylogenetic trees based on (A) partial STE3 nucleotide sequences of Cryptococcus flavescens and C. terrestris, (B) partial SXI2 nucleotide sequences of Cryptococcus flavescens, and (C) different mating types of Cryptococcus flavescens inferred from the analysis of the P/R (A) and HD (B) loci.

Andrey Yurkov (140859)
Marco A. Guerreiro (712902)
Lav Sharma (563467)
Cláudia Carvalho (3213771)
Álvaro Fonseca (712903)

March 2015

The numbers given on branches are frequencies (>70%) with which a given branch appeared in 1,000 ...

Phylogenetic analysis.

Jianhai Yin (350366)
Yujuan Shen (286665)
Zhongying Yuan (350367)
Weiyuan Lu (350368)
Yuxin Xu (350369)
Jianping Cao (41543)

February 2013

18S rRNA sequences from the respective Cryptosporidium isolates identified were compared p...

Phylogenetic relationships between Cryptosporidium proliferans and selected Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony(MP)/maximum likelihood (ML) analysis of a concatenated sequence constructed from partial DNA sequences of SSU, actin, COWP, HSP70, and TRAP-C1 genes (1991 base positions in the final dataset, ML = log = -4368.98).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony(MP)/maximum likelihood (ML) of (A) the SSU (706 base positions in the final dataset; ML = log -2886.67) and (B) TRAP-C1 (531 base positions in the final dataset, ML = log -1929.25).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony(MP)/maximum likelihood (ML) of (A) HSP70 (211 base positions in the final dataset, ML = log -1745.42) and (B) COWP (369 base positions in the final dataset, ML = log -532.78).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony (MP)/maximum likelihood (ML) of (A) actin (728 base positions in the final dataset, ML = log = -5522.35) and (B) MS1 (436 base positions in the final dataset, ML = log -886.75). The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

Numbers at the nodes represent bootstrap values for the nodes gaining more than 50% support. Inte...

Phylogenetic Relationship of 101 Cryptosporidium parasites isolated in Bangladesh to each other (open circle) and to the reference sequences (closed circle) gp60Ia (HQ631408), gp60Ib (AY738187), gp60Id (AY738192), gp60Ie (AY738184), gp60If (AF440638).

Poonum S. Korpe (2657482)
Rashidul Haque (60045)
Carol Gilchrist (2657473)
Cristian Valencia (158468)
Feiyang Niu (2657485)
Miao Lu (2657470)
Jennie Z. Ma (191150)
Sarah E. Petri (2657479)
Daniel Reichman (2657476)
Mamun Kabir (165929)
Priya Duggal (73718)
William A. Petri Jr. (165937)

May 2016

Neighbor-Joining consensus tree was drawn using the Geneious program (R7). Any apparent diversity...

Phylogenetic analysis of 100 environmental Cryptococcus spp. isolates generated by the neighbor-joining, UPGMA, and maximum likelihood methods using partial nucleotide sequences of the (A) internal transcribed spacer (ITS) and (B) concatenated sequences of the three ribosomal regions.

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Phylogenetic analysis of 100 environmental Cryptococcus spp. isolates generated by the neighbor-joining, UPGMA, and maximum likelihood methods using partial nucleotide sequences of the (A) 5′end of 18S SSU-rDNA and (B) D1/D2 region of 28S LSU-rDNA.

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Phylogenetic relationship of the SSU rRNA, HSP70, actin, and gp60 genes sequences of Cryptosporidium squirrel monkey isolate detected in this study to other known Cryptosporidium species/genotype, respectively, as inferred by a maximum likelihood analysis.

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

Bootstrap values were obtained using 1,000 pseudo-replicates and greater than 50% was shown on no...

Phylogenetic analysis of Brazilian Cryptococcus neoformans isolates inferred by neighbour-joining (NJ), maximum likelihood (ML) and unweighted pair group method with arithmetic mean (UPGMA) methods, using the concatenated data set of the seven MLST loci (CAP59, GPD1, LAC1, PLB1, SOD1, URA5, and the IGS1 region).

Leonardo Euripedes Andrade-Silva (4911574)
Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Anderson Vilas-Boas (4911571)
Delio José Mora (4014764)
Verônica Morais Manzato (4911586)
Fernanda Machado Fonseca (633557)
Kelli Buosi (4911568)
Juliana Andrade-Silva (3666190)
Bruno da Silva Prudente (4911580)
Natalia Evelyn Araujo (4911565)
Helioswilton Sales-Campos (4680832)
Marcus Vinicius da Silva (4911583)
Virmondes Rodrigues Júnior (4911562)
Wieland Meyer (161283)
Mario Léon Silva-Vergara (4911577)

March 2018

The analysis involved a total of 43 C. neoformans isolates, 17 from this study and ...

Phylogenetic relationship of the SSU rRNA and gp60 genes sequences of Cryptosporidium squirrel monkey isolate in this study to other known Cryptosporidium species/genotype and multiple subtype families in C. hominis, respectively, as inferred by a neighbor-joining analysis based on evolutionary distances calculated using the Kimura two-parameter model.

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

The tree was rooted with partial subtypes of C. fayer for the gp60 gene. Bootstrap ...

Phylogenetic trees of 103 isolates based on ITS-rDNA sequence amplified by fungus-conserved ITS1 and ITS4.

Zhenyue Lin (618780)
Shiqiang Xu (618781)
Youxiong Que (505294)
Jihua Wang (539287)
Jack C. Comstock (618782)
Jinjin Wei (618783)
Per H. McCord (618784)
Baoshan Chen (41406)
Rukai Chen (618785)
Muqing Zhang (481513)

August 2014

A phylogenetic tree was constructed on the 101 sugarcane isolates of Fusarium species comp...

Andrey Yurkov (140859)
Marco A. Guerreiro (712902)
Lav Sharma (563467)
Cláudia Carvalho (3213771)
Álvaro Fonseca (712903)

March 2015

The numbers given on branches are frequencies (>70%) with which a given branch appeared in 1,000 ...

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony(MP)/maximum likelihood (ML) of (A) HSP70 (211 base positions in the final dataset, ML = log -1745.42) and (B) COWP (369 base positions in the final dataset, ML = log -532.78).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony (MP)/maximum likelihood (ML) of (A) actin (728 base positions in the final dataset, ML = log = -5522.35) and (B) MS1 (436 base positions in the final dataset, ML = log -886.75). The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

Numbers at the nodes represent bootstrap values for the nodes gaining more than 50% support. Inte...

Poonum S. Korpe (2657482)
Rashidul Haque (60045)
Carol Gilchrist (2657473)
Cristian Valencia (158468)
Feiyang Niu (2657485)
Miao Lu (2657470)
Jennie Z. Ma (191150)
Sarah E. Petri (2657479)
Daniel Reichman (2657476)
Mamun Kabir (165929)
Priya Duggal (73718)
William A. Petri Jr. (165937)

May 2016

Neighbor-Joining consensus tree was drawn using the Geneious program (R7). Any apparent diversity...

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Phylogenetic analysis of 100 environmental Cryptococcus spp. isolates generated by the neighbor-joining, UPGMA, and maximum likelihood methods using partial nucleotide sequences of the (A) 5′end of 18S SSU-rDNA and (B) D1/D2 region of 28S LSU-rDNA.

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

Bootstrap values were obtained using 1,000 pseudo-replicates and greater than 50% was shown on no...

Leonardo Euripedes Andrade-Silva (4911574)
Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Anderson Vilas-Boas (4911571)
Delio José Mora (4014764)
Verônica Morais Manzato (4911586)
Fernanda Machado Fonseca (633557)
Kelli Buosi (4911568)
Juliana Andrade-Silva (3666190)
Bruno da Silva Prudente (4911580)
Natalia Evelyn Araujo (4911565)
Helioswilton Sales-Campos (4680832)
Marcus Vinicius da Silva (4911583)
Virmondes Rodrigues Júnior (4911562)
Wieland Meyer (161283)
Mario Léon Silva-Vergara (4911577)

March 2018

The analysis involved a total of 43 C. neoformans isolates, 17 from this study and ...

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

The tree was rooted with partial subtypes of C. fayer for the gp60 gene. Bootstrap ...

Phylogenetic trees of 103 isolates based on ITS-rDNA sequence amplified by fungus-conserved ITS1 and ITS4.

Zhenyue Lin (618780)
Shiqiang Xu (618781)
Youxiong Que (505294)
Jihua Wang (539287)
Jack C. Comstock (618782)
Jinjin Wei (618783)
Per H. McCord (618784)
Baoshan Chen (41406)
Rukai Chen (618785)
Muqing Zhang (481513)

August 2014

A phylogenetic tree was constructed on the 101 sugarcane isolates of Fusarium species comp...

Andrey Yurkov (140859)
Marco A. Guerreiro (712902)
Lav Sharma (563467)
Cláudia Carvalho (3213771)
Álvaro Fonseca (712903)

March 2015

The numbers given on branches are frequencies (>70%) with which a given branch appeared in 1,000 ...

Zhenyue Lin (618780)
Shiqiang Xu (618781)
Youxiong Que (505294)
Jihua Wang (539287)
Jack C. Comstock (618782)
Jinjin Wei (618783)
Per H. McCord (618784)
Baoshan Chen (41406)
Rukai Chen (618785)
Muqing Zhang (481513)

August 2014

A phylogenetic tree was constructed on the 101 sugarcane isolates of Fusarium species comp...

Andrey Yurkov (140859)
Marco A. Guerreiro (712902)
Lav Sharma (563467)
Cláudia Carvalho (3213771)
Álvaro Fonseca (712903)

March 2015

The numbers given on branches are frequencies (>70%) with which a given branch appeared in 1,000 ...

Phylogenetic analysis.

Jianhai Yin (350366)
Yujuan Shen (286665)
Zhongying Yuan (350367)
Weiyuan Lu (350368)
Yuxin Xu (350369)
Jianping Cao (41543)

February 2013

18S rRNA sequences from the respective Cryptosporidium isolates identified were compared p...

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony(MP)/maximum likelihood (ML) of (A) HSP70 (211 base positions in the final dataset, ML = log -1745.42) and (B) COWP (369 base positions in the final dataset, ML = log -532.78).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony (MP)/maximum likelihood (ML) of (A) actin (728 base positions in the final dataset, ML = log = -5522.35) and (B) MS1 (436 base positions in the final dataset, ML = log -886.75). The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

Numbers at the nodes represent bootstrap values for the nodes gaining more than 50% support. Inte...

Poonum S. Korpe (2657482)
Rashidul Haque (60045)
Carol Gilchrist (2657473)
Cristian Valencia (158468)
Feiyang Niu (2657485)
Miao Lu (2657470)
Jennie Z. Ma (191150)
Sarah E. Petri (2657479)
Daniel Reichman (2657476)
Mamun Kabir (165929)
Priya Duggal (73718)
William A. Petri Jr. (165937)

May 2016

Neighbor-Joining consensus tree was drawn using the Geneious program (R7). Any apparent diversity...

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Phylogenetic analysis of 100 environmental Cryptococcus spp. isolates generated by the neighbor-joining, UPGMA, and maximum likelihood methods using partial nucleotide sequences of the (A) 5′end of 18S SSU-rDNA and (B) D1/D2 region of 28S LSU-rDNA.

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

Bootstrap values were obtained using 1,000 pseudo-replicates and greater than 50% was shown on no...

Leonardo Euripedes Andrade-Silva (4911574)
Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Anderson Vilas-Boas (4911571)
Delio José Mora (4014764)
Verônica Morais Manzato (4911586)
Fernanda Machado Fonseca (633557)
Kelli Buosi (4911568)
Juliana Andrade-Silva (3666190)
Bruno da Silva Prudente (4911580)
Natalia Evelyn Araujo (4911565)
Helioswilton Sales-Campos (4680832)
Marcus Vinicius da Silva (4911583)
Virmondes Rodrigues Júnior (4911562)
Wieland Meyer (161283)
Mario Léon Silva-Vergara (4911577)

March 2018

The analysis involved a total of 43 C. neoformans isolates, 17 from this study and ...

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

The tree was rooted with partial subtypes of C. fayer for the gp60 gene. Bootstrap ...

Phylogenetic trees of 103 isolates based on ITS-rDNA sequence amplified by fungus-conserved ITS1 and ITS4.

Zhenyue Lin (618780)
Shiqiang Xu (618781)
Youxiong Que (505294)
Jihua Wang (539287)
Jack C. Comstock (618782)
Jinjin Wei (618783)
Per H. McCord (618784)
Baoshan Chen (41406)
Rukai Chen (618785)
Muqing Zhang (481513)

August 2014

A phylogenetic tree was constructed on the 101 sugarcane isolates of Fusarium species comp...

Andrey Yurkov (140859)
Marco A. Guerreiro (712902)
Lav Sharma (563467)
Cláudia Carvalho (3213771)
Álvaro Fonseca (712903)

March 2015

The numbers given on branches are frequencies (>70%) with which a given branch appeared in 1,000 ...

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony(MP)/maximum likelihood (ML) of (A) HSP70 (211 base positions in the final dataset, ML = log -1745.42) and (B) COWP (369 base positions in the final dataset, ML = log -532.78).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

The percentage of replicate trees in which the associated taxa clustered together in the bootstra...

Phylogenetic relationships between Cryptosporidium proliferans (highlighted) and other Cryptosporidium spp. as inferred by a neighbor-joining analysis (NJ)/maximum parsimony (MP)/maximum likelihood (ML) of (A) actin (728 base positions in the final dataset, ML = log = -5522.35) and (B) MS1 (436 base positions in the final dataset, ML = log -886.75). The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates).

Martin Kváč (219958)
Nikola Havrdová (846148)
Lenka Hlásková (846149)
Tereza Daňková (846150)
Jiří Kanděra (846151)
Jana Ježková (846152)
Jiří Vítovec (5666485)
Bohumil Sak (219955)
Ynes Ortega (846153)
Lihua Xiao (142413)
David Modrý (396250)
Jeba Rose Jennifer Jesudoss Chelladurai (846154)
Veronika Prantlová (846155)
John McEvoy (746496)

January 2016

Numbers at the nodes represent bootstrap values for the nodes gaining more than 50% support. Inte...

Poonum S. Korpe (2657482)
Rashidul Haque (60045)
Carol Gilchrist (2657473)
Cristian Valencia (158468)
Feiyang Niu (2657485)
Miao Lu (2657470)
Jennie Z. Ma (191150)
Sarah E. Petri (2657479)
Daniel Reichman (2657476)
Mamun Kabir (165929)
Priya Duggal (73718)
William A. Petri Jr. (165937)

May 2016

Neighbor-Joining consensus tree was drawn using the Geneious program (R7). Any apparent diversity...

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Phylogenetic analysis of 100 environmental Cryptococcus spp. isolates generated by the neighbor-joining, UPGMA, and maximum likelihood methods using partial nucleotide sequences of the (A) 5′end of 18S SSU-rDNA and (B) D1/D2 region of 28S LSU-rDNA.

Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Leonardo Andrade-Silva (633555)
Delio Jose Mora (633556)
Deborah J. Springer (217704)
Joseph Heitman (22335)
Fernanda Machado Fonseca (633557)
Dulcilena Matos (633558)
Márcia Souza Carvalho Melhem (633559)
Mario León Silva-Vergara (633560)

September 2014

Numbers at each branch indicate bootstrap values>50% based on 1,000 replicates (NJ/UPGMA/ML). The...

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

Bootstrap values were obtained using 1,000 pseudo-replicates and greater than 50% was shown on no...

Leonardo Euripedes Andrade-Silva (4911574)
Kennio Ferreira-Paim (500507)
Thatiana Bragine Ferreira (633554)
Anderson Vilas-Boas (4911571)
Delio José Mora (4014764)
Verônica Morais Manzato (4911586)
Fernanda Machado Fonseca (633557)
Kelli Buosi (4911568)
Juliana Andrade-Silva (3666190)
Bruno da Silva Prudente (4911580)
Natalia Evelyn Araujo (4911565)
Helioswilton Sales-Campos (4680832)
Marcus Vinicius da Silva (4911583)
Virmondes Rodrigues Júnior (4911562)
Wieland Meyer (161283)
Mario Léon Silva-Vergara (4911577)

March 2018

The analysis involved a total of 43 C. neoformans isolates, 17 from this study and ...

Xuehan Liu (690477)
Na Xie (819217)
Wei Li (7081)
Ziyao Zhou (690476)
Zhijun Zhong (139658)
Liuhong Shen (442141)
Suizhong Cao (690484)
Xingming Yu (819218)
Yanchuan Hu (819219)
Weigang Chen (819220)
Gangneng Peng (819221)

October 2015

The tree was rooted with partial subtypes of C. fayer for the gp60 gene. Bootstrap ...

Phylogenetic trees of 103 isolates based on ITS-rDNA sequence amplified by fungus-conserved ITS1 and ITS4.

Zhenyue Lin (618780)
Shiqiang Xu (618781)
Youxiong Que (505294)
Jihua Wang (539287)
Jack C. Comstock (618782)
Jinjin Wei (618783)
Per H. McCord (618784)
Baoshan Chen (41406)
Rukai Chen (618785)
Muqing Zhang (481513)

August 2014

A phylogenetic tree was constructed on the 101 sugarcane isolates of Fusarium species comp...

Andrey Yurkov (140859)
Marco A. Guerreiro (712902)
Lav Sharma (563467)
Cláudia Carvalho (3213771)
Álvaro Fonseca (712903)

March 2015

The numbers given on branches are frequencies (>70%) with which a given branch appeared in 1,000 ...

Phylogenetic tree of <i>Cryptosporidium</i> spp. constructed based on partial SSU rRNA nucleotide sequence.

Abstract

Extracted data

Phylogenetic tree of <i>Cryptosporidium</i> spp. constructed based on partial SSU rRNA nucleotide sequence.

Abstract

Extracted data

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