<p>(<b>A</b>) Box plots represent results of one hundred sets (each set contains one thousand randomly chosen positions). The y-axis indicates actual ENCODE TFBS overlap per one thousand tested positions. Boxes show IQR, notches indicate 95% confidence intervals of the median, whiskers extend to 1.5 times the IQR and open circles show outliers. *** P<2.2×10<sup>−16</sup>, two- tailed Mann–Whitney test. (<b>B</b>) Prevalent SNV positions are depleted for TFBS. All rare and prevalent SNV positions from the three different populations were analyzed for the ENCODE TFBS overlap. Random UCE set represents randomly chosen UCE positions (G,C content matched) that had the same number of analyzed positions as the rare and prevalent SNVs. Prevalent an...
<p>For each sample type, the median and range of abundances of the most abundant OTUs are plotted. C...
<p>Diversity statistics by <i>Candida</i> load (low (N = 8), medium (N = 12), high (N = 14)) in dent...
<p>A large value (yellow colour) indicates a high probability of belonging to the UBs cluster, while...
<p>(<b>A</b>) SE are less constraint compared to UCEs. Cumulative distribution plots of phyloP score...
<p>(<b>A</b>) Number of SNVs per mega base (Mb) of UCE sequence per sample. SNVs from three data sou...
<p>(<b>A</b>) Distribution of A,T and G,C nucleotides in the UCEs and SNV positions. <b>(B–D</b>) Cu...
A) Proportion of experimentally validated PPIs in the predicted co-occurring TF pairs by CoTRaCTE by...
<p>(A) The distributions of the T-scores in the real (blue) and permuted (red) data sets. The varian...
<p>Bootstrapped (<i>n</i> = 8) ‘uniform experimental data’ based on the original distribution (thick...
<p>The numbers in parentheses in the first column are the number of genes. In each TF peak column, w...
Box plot is showing the distribution in the proportion of four key phyla (Firmicutes, Bacteroidetes,...
<p>Box plots indicate the posterior predictive distributions for each locus (1,000 replicates; horiz...
<p>a) Detailed patterns exhibited by each individual in all 25 test sessions; values in the bar grap...
<p>Each point represents a student’s covariate information, and each connecting edge indicates that ...
(A) CDRH3 length distribution averaged over individuals within each cohort of B cell receptors. A co...
<p>For each sample type, the median and range of abundances of the most abundant OTUs are plotted. C...
<p>Diversity statistics by <i>Candida</i> load (low (N = 8), medium (N = 12), high (N = 14)) in dent...
<p>A large value (yellow colour) indicates a high probability of belonging to the UBs cluster, while...
<p>(<b>A</b>) SE are less constraint compared to UCEs. Cumulative distribution plots of phyloP score...
<p>(<b>A</b>) Number of SNVs per mega base (Mb) of UCE sequence per sample. SNVs from three data sou...
<p>(<b>A</b>) Distribution of A,T and G,C nucleotides in the UCEs and SNV positions. <b>(B–D</b>) Cu...
A) Proportion of experimentally validated PPIs in the predicted co-occurring TF pairs by CoTRaCTE by...
<p>(A) The distributions of the T-scores in the real (blue) and permuted (red) data sets. The varian...
<p>Bootstrapped (<i>n</i> = 8) ‘uniform experimental data’ based on the original distribution (thick...
<p>The numbers in parentheses in the first column are the number of genes. In each TF peak column, w...
Box plot is showing the distribution in the proportion of four key phyla (Firmicutes, Bacteroidetes,...
<p>Box plots indicate the posterior predictive distributions for each locus (1,000 replicates; horiz...
<p>a) Detailed patterns exhibited by each individual in all 25 test sessions; values in the bar grap...
<p>Each point represents a student’s covariate information, and each connecting edge indicates that ...
(A) CDRH3 length distribution averaged over individuals within each cohort of B cell receptors. A co...
<p>For each sample type, the median and range of abundances of the most abundant OTUs are plotted. C...
<p>Diversity statistics by <i>Candida</i> load (low (N = 8), medium (N = 12), high (N = 14)) in dent...
<p>A large value (yellow colour) indicates a high probability of belonging to the UBs cluster, while...