<p>(A) The mean allelic ratio of the Alt-M alleles the <i>in silico</i> data to their corresponding expected allelic ratio. Eg. in 70∶30 simulation, Alt maternal alleles have an observed mean allelic ratio of 69.0. (B) The mean allelic ratio of Alt-P alleles from each in silico dataset. Eg. in 70∶30 simulation, Alt-P alleles have an observed allelic ratio of 27.6. Each color indicates the correlation of observed vs. expected ratios at minimum sequence coverage of 10X, 20X, 30X, 40X, and 50X. Pearson correlation coefficient was highest at r>0.9998 above 20X read coverage.</p
<p>(A) Correlation between –log<sub>10</sub> p-values generated using a standard association test an...
<p>Range of correlation values for coverage levels 1X, 2.5X, 5X, 10X and 15X are displayed as a whis...
<p>The vertical dashed line gives the simulated heritability (QTL, MRK, MRK+QTL indicate whether QTL...
<p>(A) Overview of the simulation study. From a reference transcriptome (a), two haplotypes are simu...
<p><b>5A</b> Range of correlation values at each coverage level for the pair-wise comparisons of the...
<p>(<i>N</i> = 5000 “genes”) against the known true correlations used to generate the data (dotted l...
<p>Pearson's correlation of real allele frequencies in total sample (calculated from individual geno...
<p>Relationships between average allele coverage, probability of detection, and the number of matchi...
<p>Histograms of showing the allelic ratio distribution after each heterozygous SNP in the in silico...
(A) Pairwise population comparison of heritability (h2) and rG for each gene. The y-axis is the mini...
Chartreuse line depicts autosome to chromosome X haplotype ratio of a theoretical population with a ...
<p>Three different scenarios were simulated: (A) dominance and selection are different in every gene...
<p>The graph shows pair-wise Pearson correlation coefficients for both sequencing coverage (top-left...
<p>Data was simulated under Scenario 7 (DominantDominant) with and . The table shows the mean of th...
<p>A: Heatmap of correlation coefficients (Spearman’s rho) between the OTU abundance shift and the m...
<p>(A) Correlation between –log<sub>10</sub> p-values generated using a standard association test an...
<p>Range of correlation values for coverage levels 1X, 2.5X, 5X, 10X and 15X are displayed as a whis...
<p>The vertical dashed line gives the simulated heritability (QTL, MRK, MRK+QTL indicate whether QTL...
<p>(A) Overview of the simulation study. From a reference transcriptome (a), two haplotypes are simu...
<p><b>5A</b> Range of correlation values at each coverage level for the pair-wise comparisons of the...
<p>(<i>N</i> = 5000 “genes”) against the known true correlations used to generate the data (dotted l...
<p>Pearson's correlation of real allele frequencies in total sample (calculated from individual geno...
<p>Relationships between average allele coverage, probability of detection, and the number of matchi...
<p>Histograms of showing the allelic ratio distribution after each heterozygous SNP in the in silico...
(A) Pairwise population comparison of heritability (h2) and rG for each gene. The y-axis is the mini...
Chartreuse line depicts autosome to chromosome X haplotype ratio of a theoretical population with a ...
<p>Three different scenarios were simulated: (A) dominance and selection are different in every gene...
<p>The graph shows pair-wise Pearson correlation coefficients for both sequencing coverage (top-left...
<p>Data was simulated under Scenario 7 (DominantDominant) with and . The table shows the mean of th...
<p>A: Heatmap of correlation coefficients (Spearman’s rho) between the OTU abundance shift and the m...
<p>(A) Correlation between –log<sub>10</sub> p-values generated using a standard association test an...
<p>Range of correlation values for coverage levels 1X, 2.5X, 5X, 10X and 15X are displayed as a whis...
<p>The vertical dashed line gives the simulated heritability (QTL, MRK, MRK+QTL indicate whether QTL...