<p>We define the “distinctness” of a pocket as the difference in exemplar distances of the closest conformation from a different family member, and the closest conformation from one’s own ensemble. Histograms are shown over conformations that comprise the ensembles used above. By this measure, <i>all</i> known inhibitors of <i>all</i> Bcl-2 family members bind to pockets that are not unique to their cognate target protein (i.e. low “distinctness”). Data are shown for three representative Bcl-2 family members, the complete set are included as <b><a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1004081#pcbi.1004081.s007" target="_blank">S7 Fig</a></b>.</p
<p>. An unbound crystal structure (<i>pink</i>), an inhibitor-bound crystal structure (<i>green, wit...
<p>Distributions of RMSD over interface atoms (iRMSD) to the closest inhibitor-bound crystal structu...
Despite intense interest and considerable effort via high-throughput screening, there are few exampl...
<p>The ensemble of pockets observed from simulation: individual conformations are represented as poi...
<p>(A) For each inhibitor-bound pocket, the exemplar distance to the most similar pocket is indicate...
<p>(A) To examine the effect of the particular target residues used in generating the ensemble of po...
<p>In all cases color gradient indicates the similarity between complexes, expressed as Z-scores (<i...
Small-molecules that inhibit interactions between specific pairs of proteins have long repre-sented ...
<p>(A) A projection built using ensembles collected from simulations of several Bcl-2 family members...
<div><p>Small-molecules that inhibit interactions between specific pairs of proteins have long repre...
<p>(<b>A</b>) Cumulative fraction of pocket pairs at a pocket similarity better than then given PS-s...
<p>For each bromodomain, the exemplar distance of (+)-JQ1 to the most similar pocket is indicated by...
Small-molecules that inhibit interactions between specific pairs of proteins have long represented a...
Small-molecules that inhibit interactions between specific pairs of proteins have long represented a...
<p>(<b>A</b>) Bcl-X<sub>L</sub> (<i>grey surface</i>) is shown in complex with an inhibitor (<i>blue...
<p>. An unbound crystal structure (<i>pink</i>), an inhibitor-bound crystal structure (<i>green, wit...
<p>Distributions of RMSD over interface atoms (iRMSD) to the closest inhibitor-bound crystal structu...
Despite intense interest and considerable effort via high-throughput screening, there are few exampl...
<p>The ensemble of pockets observed from simulation: individual conformations are represented as poi...
<p>(A) For each inhibitor-bound pocket, the exemplar distance to the most similar pocket is indicate...
<p>(A) To examine the effect of the particular target residues used in generating the ensemble of po...
<p>In all cases color gradient indicates the similarity between complexes, expressed as Z-scores (<i...
Small-molecules that inhibit interactions between specific pairs of proteins have long repre-sented ...
<p>(A) A projection built using ensembles collected from simulations of several Bcl-2 family members...
<div><p>Small-molecules that inhibit interactions between specific pairs of proteins have long repre...
<p>(<b>A</b>) Cumulative fraction of pocket pairs at a pocket similarity better than then given PS-s...
<p>For each bromodomain, the exemplar distance of (+)-JQ1 to the most similar pocket is indicated by...
Small-molecules that inhibit interactions between specific pairs of proteins have long represented a...
Small-molecules that inhibit interactions between specific pairs of proteins have long represented a...
<p>(<b>A</b>) Bcl-X<sub>L</sub> (<i>grey surface</i>) is shown in complex with an inhibitor (<i>blue...
<p>. An unbound crystal structure (<i>pink</i>), an inhibitor-bound crystal structure (<i>green, wit...
<p>Distributions of RMSD over interface atoms (iRMSD) to the closest inhibitor-bound crystal structu...
Despite intense interest and considerable effort via high-throughput screening, there are few exampl...