R script that runs continuous and discontinuous limma analysis, generates heatmap and plots profiles of transcriptional changes across development. Requires pair files, available from ArrayExpress accession number E-MTAB-3388, as well as the limma_coefficients_for-plots.txt tabl
R-Markdown file. This contains the in house scripts used to process raw data files and run all downs...
This file contains the LIMMA output for normalized and filtered microarray data. This data was then ...
Limma differential expression analysis code used by AMPEL BioSolutions in publications
R script that runs continuous and discontinuous limma analysis, generates heatmap and plots profiles...
Table modified from output of the R Script, allowing visualisation of changing patterns of gene expr...
This text file contains information pertaining to each microarray (sex, population, temperature, tan...
LIMMA output file using all 20 021 genes present on the microarray, as described in the supplemental...
This R script plots LD dendrograms, heatmaps, and networks, and plots patterns of allele frequency c...
This free open-source software implements academic research by the authors and co-workers. If you us...
LIMMA pipeline Implementation of LIMMA (Linear Models for Microarray Data), an empirical Bayes met...
This free open-source software implements academic research by the authors and co-workers. If you us...
LIMMA pipeline Implementation of LIMMA (Linear Models for Microarray Data), an empirical Bayes met...
Annotated R script for obtaining gene lists from gene ontology enrichement analyses (completed using...
This free open-source software implements academic research by the authors and co-workers. If you us...
limma, edgeR and Glimma are R packages that are part of Bioconductor, the world's foremost software ...
R-Markdown file. This contains the in house scripts used to process raw data files and run all downs...
This file contains the LIMMA output for normalized and filtered microarray data. This data was then ...
Limma differential expression analysis code used by AMPEL BioSolutions in publications
R script that runs continuous and discontinuous limma analysis, generates heatmap and plots profiles...
Table modified from output of the R Script, allowing visualisation of changing patterns of gene expr...
This text file contains information pertaining to each microarray (sex, population, temperature, tan...
LIMMA output file using all 20 021 genes present on the microarray, as described in the supplemental...
This R script plots LD dendrograms, heatmaps, and networks, and plots patterns of allele frequency c...
This free open-source software implements academic research by the authors and co-workers. If you us...
LIMMA pipeline Implementation of LIMMA (Linear Models for Microarray Data), an empirical Bayes met...
This free open-source software implements academic research by the authors and co-workers. If you us...
LIMMA pipeline Implementation of LIMMA (Linear Models for Microarray Data), an empirical Bayes met...
Annotated R script for obtaining gene lists from gene ontology enrichement analyses (completed using...
This free open-source software implements academic research by the authors and co-workers. If you us...
limma, edgeR and Glimma are R packages that are part of Bioconductor, the world's foremost software ...
R-Markdown file. This contains the in house scripts used to process raw data files and run all downs...
This file contains the LIMMA output for normalized and filtered microarray data. This data was then ...
Limma differential expression analysis code used by AMPEL BioSolutions in publications
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