Publication date
April 2019
DOIAbstract
This R script plots LD dendrograms, heatmaps, and networks, and plots patterns of allele frequency change by LD cluster
This R script plots LD dendrograms, heatmaps, and networks, and plots patterns of allele frequency change by LD cluster
<p>Red areas represent higher levels of LD. Dark triangles represent haplotype blocks. Site 1–17 rep...
<p>(<b>A</b>) LD-plot of <i>ChREBP</i> established using Haploview 4.2 program based on HapMap data....
<p>The plot depicts the haplotype block containing the rs71305152 indel for the HapMap CHB (Han Chin...
We describe the R function LDheatmap() which produces a graphical display, as a heat map, of pairwis...
<p>The green horizontal line shows the critical r<sup>2</sup> while the red curve displays the LD de...
<p>Linkage Disequilibrium (LD) plot of studied EDNRB SNPs. a) D´ b) R<sup>2</sup>.</p
<p>The LD plots were generated by Haploview 4.2. Polymorphisms are identified by their dbSNP rs numb...
Assessing the patterns of linkage disequilibrium (LD) has become an important issue in both evolutio...
<p>Each square indicates the level of LD between two SNPs. The color code is defined as: red (high L...
<p>Linkage disequilibrium (LD) plot of <i>CD44</i> gene in Hapmap- GIH population.</p
A linkage disequilibrium map is expressed in linkage disequilibrium (LD) units (LDU) discriminating ...
Linkage disequilibrium (LD) maps are analogous to linkage maps in that map distances are additive bu...
<p>Dark cells contain LD values significantly different from zero. An asterisk next to a locus name ...
<p>LD is given based on r<sup>2</sup> estimated using the current dataset. Each diamond indicates th...
<p>Pairwise linkage disequilibrium (r2) of genomic markers in each chromosome.</p
<p>Red areas represent higher levels of LD. Dark triangles represent haplotype blocks. Site 1–17 rep...
<p>(<b>A</b>) LD-plot of <i>ChREBP</i> established using Haploview 4.2 program based on HapMap data....
<p>The plot depicts the haplotype block containing the rs71305152 indel for the HapMap CHB (Han Chin...
We describe the R function LDheatmap() which produces a graphical display, as a heat map, of pairwis...
<p>The green horizontal line shows the critical r<sup>2</sup> while the red curve displays the LD de...
<p>Linkage Disequilibrium (LD) plot of studied EDNRB SNPs. a) D´ b) R<sup>2</sup>.</p
<p>The LD plots were generated by Haploview 4.2. Polymorphisms are identified by their dbSNP rs numb...
Assessing the patterns of linkage disequilibrium (LD) has become an important issue in both evolutio...
<p>Each square indicates the level of LD between two SNPs. The color code is defined as: red (high L...
<p>Linkage disequilibrium (LD) plot of <i>CD44</i> gene in Hapmap- GIH population.</p
A linkage disequilibrium map is expressed in linkage disequilibrium (LD) units (LDU) discriminating ...
Linkage disequilibrium (LD) maps are analogous to linkage maps in that map distances are additive bu...
<p>Dark cells contain LD values significantly different from zero. An asterisk next to a locus name ...
<p>LD is given based on r<sup>2</sup> estimated using the current dataset. Each diamond indicates th...
<p>Pairwise linkage disequilibrium (r2) of genomic markers in each chromosome.</p
<p>Red areas represent higher levels of LD. Dark triangles represent haplotype blocks. Site 1–17 rep...
<p>(<b>A</b>) LD-plot of <i>ChREBP</i> established using Haploview 4.2 program based on HapMap data....
<p>The plot depicts the haplotype block containing the rs71305152 indel for the HapMap CHB (Han Chin...
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