Python script that downsamples the population sizes and calculates the joint folded Site Frequency Spectrum (for the minor allele frequency) of two populations based on a vcf file. Includes an example vcf input file and population map
Single nucleotide polymorphism data for all individuals. Used for DAPC analyses and calculating f-st...
column 1 = inline barcode (5' end of the forward read), column 2 = sample id (sample id in the vcf f...
R script for converting 'vcf' data from SNP pipeline to a single datafile of genotype and read count...
Python script that downsamples the population sizes and calculates the joint folded Site Frequency S...
Python script that downsamples the population sizes and calculates the joint folded Site Frequency S...
Script to calculate allele frequencies from a filtered VCF (.geno) file. Open in a text editor to se...
Python scripts used for VCF files filtering, Fst simulations and allele specific gene expression ass...
This archive contains Python code for simulating populations using the package simuPOP, plus additio...
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
MotivationThe distribution of allele frequencies across polymorphic sites, also known as the site fr...
This script was designed to identify the distribution of private alleles among individuals of a popu...
VCF file containing data for 1286 individuals and 12666 loci. Minor allele frequency cut-off of 0.05...
Input file of SNP genotypes across 43 pupfishes used for calculating f4 statistic in sliding windows...
Variant call format file of SNPs generated using the SAMTOOLS mpileup function. All populations wer...
Annotated VCF file containing allele frequency and read depths of the 14 samples described in Bergla...
Single nucleotide polymorphism data for all individuals. Used for DAPC analyses and calculating f-st...
column 1 = inline barcode (5' end of the forward read), column 2 = sample id (sample id in the vcf f...
R script for converting 'vcf' data from SNP pipeline to a single datafile of genotype and read count...
Python script that downsamples the population sizes and calculates the joint folded Site Frequency S...
Python script that downsamples the population sizes and calculates the joint folded Site Frequency S...
Script to calculate allele frequencies from a filtered VCF (.geno) file. Open in a text editor to se...
Python scripts used for VCF files filtering, Fst simulations and allele specific gene expression ass...
This archive contains Python code for simulating populations using the package simuPOP, plus additio...
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
MotivationThe distribution of allele frequencies across polymorphic sites, also known as the site fr...
This script was designed to identify the distribution of private alleles among individuals of a popu...
VCF file containing data for 1286 individuals and 12666 loci. Minor allele frequency cut-off of 0.05...
Input file of SNP genotypes across 43 pupfishes used for calculating f4 statistic in sliding windows...
Variant call format file of SNPs generated using the SAMTOOLS mpileup function. All populations wer...
Annotated VCF file containing allele frequency and read depths of the 14 samples described in Bergla...
Single nucleotide polymorphism data for all individuals. Used for DAPC analyses and calculating f-st...
column 1 = inline barcode (5' end of the forward read), column 2 = sample id (sample id in the vcf f...
R script for converting 'vcf' data from SNP pipeline to a single datafile of genotype and read count...
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