Python script that downsamples the population sizes and calculates the joint folded Site Frequency Spectrum (for the minor allele frequency) of two populations based on a vcf file. Modified from Papadopoulou and Knowles 2015 (DOI: http://dx.doi.org/10.5061/dryad.23hs1
This script was designed to identify the distribution of private alleles among individuals of a popu...
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
Used data for evaluation in pending Recomb 2022 submission "Genetic Polyploid Phasing using Marker S...
Python script that downsamples the population sizes and calculates the joint folded Site Frequency S...
MotivationThe distribution of allele frequencies across polymorphic sites, also known as the site fr...
This archive contains Python code for simulating populations using the package simuPOP, plus additio...
Analysis for paper: Effect of Mutation Subtypes on the Allele Frequency Spectrum and Population Gene...
[18 files] Site frequency spectra for autosomal scaffolds considering different site classes: 4D sit...
Variant call format (VCF) file for 16 Gopherus polyphemus samples for the publication: Elbers, J.P.,...
Contains the main file from Rougemont et al. study . 9 pairwise vcf used to compute diversity analys...
The Site Frequency Spectrum (SFS) and the heterozygosity of allelic variants are among the most impo...
Python scripts used for VCF files filtering, Fst simulations and allele specific gene expression ass...
<p>Only SNPs found in the modal number of samples per groups were used. In each figure, x and y axis...
VCF file containing data for 1286 individuals and 12666 loci. Minor allele frequency cut-off of 0.05...
Script to calculate allele frequencies from a filtered VCF (.geno) file. Open in a text editor to se...
This script was designed to identify the distribution of private alleles among individuals of a popu...
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
Used data for evaluation in pending Recomb 2022 submission "Genetic Polyploid Phasing using Marker S...
Python script that downsamples the population sizes and calculates the joint folded Site Frequency S...
MotivationThe distribution of allele frequencies across polymorphic sites, also known as the site fr...
This archive contains Python code for simulating populations using the package simuPOP, plus additio...
Analysis for paper: Effect of Mutation Subtypes on the Allele Frequency Spectrum and Population Gene...
[18 files] Site frequency spectra for autosomal scaffolds considering different site classes: 4D sit...
Variant call format (VCF) file for 16 Gopherus polyphemus samples for the publication: Elbers, J.P.,...
Contains the main file from Rougemont et al. study . 9 pairwise vcf used to compute diversity analys...
The Site Frequency Spectrum (SFS) and the heterozygosity of allelic variants are among the most impo...
Python scripts used for VCF files filtering, Fst simulations and allele specific gene expression ass...
<p>Only SNPs found in the modal number of samples per groups were used. In each figure, x and y axis...
VCF file containing data for 1286 individuals and 12666 loci. Minor allele frequency cut-off of 0.05...
Script to calculate allele frequencies from a filtered VCF (.geno) file. Open in a text editor to se...
This script was designed to identify the distribution of private alleles among individuals of a popu...
vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...
Used data for evaluation in pending Recomb 2022 submission "Genetic Polyploid Phasing using Marker S...
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