<p>Phylogenetic tree of families with significant abundances changes in pre versus low, pre versus high or low versus high WGA treatment samples (paired student’s t-test). Please note that sample type T (treated biosolid) did not reveal any families with significant changes. Dark blue indicates a significantly negative delta, while dark red indicates a significantly positive delta. The amount of significant t-tests per family is displayed in the ring “score”, whereas dark grey indicates 7 out of 15 tests were significant, while white indicates only 1 difference (families without significant changes are not displayed). The inner rings show barplots for 16S rRNA gene GC content and genomic GC content.</p
<p>Negative fold change scores (log2) indicate genera with decreased abundance in AMD-positive sampl...
<p>The cluster shown represents 3,117 genes. Each row represents a gene, whereas each column corresp...
The bacterial OTUs that could not be assigned to a genus are represented as “Unclassified” and are a...
The plots shows the log2-fold changes for genus-level bacterial OTUs that were statistically signifi...
Log-fold change estimates relative to medium group, of genera identified as differentially abundant ...
<p>A: Heatmap of correlation coefficients (Spearman’s rho) between the OTU abundance shift and the m...
<p>Abundances are based on the weighted average of the three sequencing replicates of 1-L tank sampl...
<p>(a) Phylogenetic tree of sequences from DGGE profiles. The fragment sequences were named for thei...
Stacked barplot depicting mean relative abundances in patient and control samples obtained from (A) ...
<p>Percent mean abundances (and standard deviations) of genera in the 3 pyrotag and Sanger sequence ...
<p>Circles represent individual taxa, and the relationship between the log<sub>10</sub> of their abu...
<p>Numbers at the node are bootstrap values based on 1000 re-samplings. The scale bar represents per...
Boxplots indicate the distribution of the relative abundances of various taxa and corresponding line...
<p>Data from U.S children, Bangladeshi children, and Bangladeshi adults were rarefied to the same nu...
<div><p>Horizontal bars indicate the relative rates of change among taxa for each family (where rate...
<p>Negative fold change scores (log2) indicate genera with decreased abundance in AMD-positive sampl...
<p>The cluster shown represents 3,117 genes. Each row represents a gene, whereas each column corresp...
The bacterial OTUs that could not be assigned to a genus are represented as “Unclassified” and are a...
The plots shows the log2-fold changes for genus-level bacterial OTUs that were statistically signifi...
Log-fold change estimates relative to medium group, of genera identified as differentially abundant ...
<p>A: Heatmap of correlation coefficients (Spearman’s rho) between the OTU abundance shift and the m...
<p>Abundances are based on the weighted average of the three sequencing replicates of 1-L tank sampl...
<p>(a) Phylogenetic tree of sequences from DGGE profiles. The fragment sequences were named for thei...
Stacked barplot depicting mean relative abundances in patient and control samples obtained from (A) ...
<p>Percent mean abundances (and standard deviations) of genera in the 3 pyrotag and Sanger sequence ...
<p>Circles represent individual taxa, and the relationship between the log<sub>10</sub> of their abu...
<p>Numbers at the node are bootstrap values based on 1000 re-samplings. The scale bar represents per...
Boxplots indicate the distribution of the relative abundances of various taxa and corresponding line...
<p>Data from U.S children, Bangladeshi children, and Bangladeshi adults were rarefied to the same nu...
<div><p>Horizontal bars indicate the relative rates of change among taxa for each family (where rate...
<p>Negative fold change scores (log2) indicate genera with decreased abundance in AMD-positive sampl...
<p>The cluster shown represents 3,117 genes. Each row represents a gene, whereas each column corresp...
The bacterial OTUs that could not be assigned to a genus are represented as “Unclassified” and are a...