<p>The number of reads and average length of the reads after the initial quality filtering and after all quality control steps as well as the number of chimeras with the different bioinformatic strategies.</p><p><sup>a</sup>After alignment</p><p><sup>b</sup>Calculated when calling OTUs at the 100% level</p><p>The number of reads, average length of the reads and the number of chimeras.</p
<p>The number of Metazoa OTUs generated with the different strategies and removed through chimera de...
<p>“Total Reads” indicates the number of 36-nt reads generated for each strain by Illumina GAII sequ...
<p>Number of reads after each step of processing and taxonomy mapping for each sample.</p
<p>Reads were aligned to reference sequences by allowing two mismatches.</p><p>Read counts and perce...
a<p>The percentage of reads with mismatches, out of the total number of aligned reads for each speci...
<p>(A) Number of reads, number of singletons, number of unique reads before any filtering, and propo...
<p>Step-by-step normalized total number of read bases for various sequencing error rates and read le...
<p>Number of sequenced reads (50 nucleotide long in average) and of nucleotides after SOLiD sequenci...
<p><b>A</b>) The noise rate in background samples for analysis pipelines 1)–3) as the base alignment...
<p>Total read number generated by Illumina RNA-seq and following quality control measures including ...
<p>Total number of sequences, indices for the number of observed operational taxonomic units (OTUs) ...
<p>The alignment statistics of the percentage of reads aligned by different aligners.</p
<p>Each symbol corresponds to a quality threshold. Peak Q parameters for each tool are reported.</p
a<p>More than 70% of bases in a read with >20 phred score and reads which are of low quality were tr...
<p>Read length distribution and number of reads throughout QDD bioinformatics pipeline steps.</p
<p>The number of Metazoa OTUs generated with the different strategies and removed through chimera de...
<p>“Total Reads” indicates the number of 36-nt reads generated for each strain by Illumina GAII sequ...
<p>Number of reads after each step of processing and taxonomy mapping for each sample.</p
<p>Reads were aligned to reference sequences by allowing two mismatches.</p><p>Read counts and perce...
a<p>The percentage of reads with mismatches, out of the total number of aligned reads for each speci...
<p>(A) Number of reads, number of singletons, number of unique reads before any filtering, and propo...
<p>Step-by-step normalized total number of read bases for various sequencing error rates and read le...
<p>Number of sequenced reads (50 nucleotide long in average) and of nucleotides after SOLiD sequenci...
<p><b>A</b>) The noise rate in background samples for analysis pipelines 1)–3) as the base alignment...
<p>Total read number generated by Illumina RNA-seq and following quality control measures including ...
<p>Total number of sequences, indices for the number of observed operational taxonomic units (OTUs) ...
<p>The alignment statistics of the percentage of reads aligned by different aligners.</p
<p>Each symbol corresponds to a quality threshold. Peak Q parameters for each tool are reported.</p
a<p>More than 70% of bases in a read with >20 phred score and reads which are of low quality were tr...
<p>Read length distribution and number of reads throughout QDD bioinformatics pipeline steps.</p
<p>The number of Metazoa OTUs generated with the different strategies and removed through chimera de...
<p>“Total Reads” indicates the number of 36-nt reads generated for each strain by Illumina GAII sequ...
<p>Number of reads after each step of processing and taxonomy mapping for each sample.</p