<p>(A) Number of reads, number of singletons, number of unique reads before any filtering, and proportion of chimeras detected by Perseus in the different samples. (B) Effect of filtering procedures on proportion of reads remaining after filtering, number of OTU<sub>99%</sub>, proportion of unclassified sequences, and error rate. ‘Unclassified’ reads are reads that could not be assigned to species level.</p
<p>The number of reads and average length of the reads after the initial quality filtering and after...
<p>Chimeras defined by being recognized by UCHIME in <i>de novo</i> mode with score ≥ 1. Top: Freque...
Throughout the recent years, 454 pyrosequencing has emerged as an efficient alternative to tradition...
<p>Compared to the initial distribution of species in terms of cell number (first row) and biomass (...
<p>The 454 pyrosequencing reads were processed with four different sequence filtering strategies, an...
There has been a rapid proliferation of approaches for processing and manipulating second generation...
There has been a rapid proliferation of approaches for processing and manipulating second generation...
Background: Roche 454 pyrosequencing platform is often considered the most versatile of the Next Gen...
<p>Total number of reads after data cleaning (pyrosequencing noise and chimera removal), after filte...
<p>Abbreviation: OTU, operational taxonomic unit.</p><p>* The numbers of the high quality reads were...
Background: In many environmental genomics applications a homologous region of DNA from a diverse sa...
Background: In many environmental genomics applications a homologous region of DNA from a diverse sa...
a<p>Total number of reads that spanned V1.</p>b<p>Number of reads used for analysis excluding reads ...
A<p>Number of reads produced by the 454-instrument.</p>B<p>Chloroplast DNA (cpDNA).</p>C<p>Each libr...
a<p>More than 70% of bases in a read with >20 phred score and reads which are of low quality were tr...
<p>The number of reads and average length of the reads after the initial quality filtering and after...
<p>Chimeras defined by being recognized by UCHIME in <i>de novo</i> mode with score ≥ 1. Top: Freque...
Throughout the recent years, 454 pyrosequencing has emerged as an efficient alternative to tradition...
<p>Compared to the initial distribution of species in terms of cell number (first row) and biomass (...
<p>The 454 pyrosequencing reads were processed with four different sequence filtering strategies, an...
There has been a rapid proliferation of approaches for processing and manipulating second generation...
There has been a rapid proliferation of approaches for processing and manipulating second generation...
Background: Roche 454 pyrosequencing platform is often considered the most versatile of the Next Gen...
<p>Total number of reads after data cleaning (pyrosequencing noise and chimera removal), after filte...
<p>Abbreviation: OTU, operational taxonomic unit.</p><p>* The numbers of the high quality reads were...
Background: In many environmental genomics applications a homologous region of DNA from a diverse sa...
Background: In many environmental genomics applications a homologous region of DNA from a diverse sa...
a<p>Total number of reads that spanned V1.</p>b<p>Number of reads used for analysis excluding reads ...
A<p>Number of reads produced by the 454-instrument.</p>B<p>Chloroplast DNA (cpDNA).</p>C<p>Each libr...
a<p>More than 70% of bases in a read with >20 phred score and reads which are of low quality were tr...
<p>The number of reads and average length of the reads after the initial quality filtering and after...
<p>Chimeras defined by being recognized by UCHIME in <i>de novo</i> mode with score ≥ 1. Top: Freque...
Throughout the recent years, 454 pyrosequencing has emerged as an efficient alternative to tradition...