Table S1. Quantification of plasmid carryover from virus production. The levels of HIV-1 or HIV-2 plasmids from transfections remaining in genomic DNA samples were determined using quantitative PCR-based approaches
Figure S2. The estimated pfp (percentage of false prediction) versus the number of identified genes ...
Combinatorial strategy to build 8 residual vDNA clones. Each 5′-half clones (i.e., clone 1 and 6 sho...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Dataset S1. HIV-1 and HIV-2 mutation frequencies determined by Illumina sequencing. For each sample,...
Figure S1. Bias of transversion spectra toward C-to-A and G-to-T mutations. The transversion spectra...
Table S5. Identification and masking of plasmid error hotspots. Plasmid error hotspots (i.e. common ...
Table S2. Output of 2Â ĂÂ 150 Illumina sequencing of HIV-1 and HIV-2 after data processing. For eac...
Dataset S2. HIV-1 and HIV-2 hypermutant frequencies determined by Illumina sequencing. For each samp...
Figure S2. Transition frequencies are similar across amplicons in the absence of G-to-A hypermutants...
Table S4. Identification of G-to-A hypermutation hotspots in HIV-1 and HIV-2. G-to-A hypermutation h...
Figure S3. Dinucleotide contexts of G-to-A mutations not occurring within G-to-A hypermutants. The d...
Supplementary Tables. Sequence and error profile of HIV plasmids (Tables S1-S3). Training performanc...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Chromosomal distribution of H3K4me3 binding sites in HIV-1 latently infected cells. Enrichment patte...
Figure S1. Validation of shRNA system for the study of HIV-1 replication. (A) Western blot detecting...
Figure S2. The estimated pfp (percentage of false prediction) versus the number of identified genes ...
Combinatorial strategy to build 8 residual vDNA clones. Each 5′-half clones (i.e., clone 1 and 6 sho...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Dataset S1. HIV-1 and HIV-2 mutation frequencies determined by Illumina sequencing. For each sample,...
Figure S1. Bias of transversion spectra toward C-to-A and G-to-T mutations. The transversion spectra...
Table S5. Identification and masking of plasmid error hotspots. Plasmid error hotspots (i.e. common ...
Table S2. Output of 2Â ĂÂ 150 Illumina sequencing of HIV-1 and HIV-2 after data processing. For eac...
Dataset S2. HIV-1 and HIV-2 hypermutant frequencies determined by Illumina sequencing. For each samp...
Figure S2. Transition frequencies are similar across amplicons in the absence of G-to-A hypermutants...
Table S4. Identification of G-to-A hypermutation hotspots in HIV-1 and HIV-2. G-to-A hypermutation h...
Figure S3. Dinucleotide contexts of G-to-A mutations not occurring within G-to-A hypermutants. The d...
Supplementary Tables. Sequence and error profile of HIV plasmids (Tables S1-S3). Training performanc...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
Chromosomal distribution of H3K4me3 binding sites in HIV-1 latently infected cells. Enrichment patte...
Figure S1. Validation of shRNA system for the study of HIV-1 replication. (A) Western blot detecting...
Figure S2. The estimated pfp (percentage of false prediction) versus the number of identified genes ...
Combinatorial strategy to build 8 residual vDNA clones. Each 5′-half clones (i.e., clone 1 and 6 sho...
Chromosomal distribution of H3K9ac binding sites in HIV-1 latently infected cells. Enrichment patter...
DOI
Add to ORKG