<p>WT, wild-type strain Br48; Myc, mycelia; GT, germination tubes</p><p>The edgeR package was used to identify genes differentially expressed or enriched with the corrected p-value cutoffs of 0.01 (ChIP-seq analysis) or 0.001 (RNA-seq analysis).</p><p>*, Data from twoΔmoset1 complemented strains (Δmoset1-TF2 and -TF3) with FLAG-tagged MoSET1 were used in the analysis</p><p>**, number in parentheses represent the number of MoSET1-dependent genes (see text)</p><p>Number of genes differentially enriched for H3K4me2/H3K4me3 in ChIP-seq analysis and differentially expressed in RNA-seq analysis between mycelia and germination tubes.</p
<p>(<b>A</b>) RNA-seq of wild-type (wt), <i>Suz12<sup>GT</sup></i>, <i>Suz12<sup>Δ</sup></i>, and <i...
Supplementary Material data for 'Trichoderma atroviride hyphal regeneration and conidiation depend o...
(A) ER stress assay of U. maydis strain JB1 (WT), JB1Δcib1 and UVO151 (Pcrg:clp1). Serial 10-fold di...
<p>“MoSET1-dependent genes” were defined based on a comparison of FC values (germination tubes [GT]/...
<p>(A)-(B) Genes were separated into groups of 100 genes according to their expression levels from h...
<p>(<b>A, B</b>) Overlap of data sets for genes that are preferentially enriched for H3K4Me3 and hav...
<p>(A) Dot plot representing differentially expressed genes in NTKO and TKO cells from the microarra...
<p>(A) Schematic representation of the position in which sRNAs mapped to the selected genes. Each ba...
<p>(A) Leaf explants (left) and calli (right) were used for the ChIP-chip experiment. For preparatio...
<p>(<b>A</b>) Overlap of called genes identifies subsets of genes that are preferentially enriched f...
<p>(A) Scatter plots displaying expression levels of each gene (dots) in <i>rim101∆</i> strains rela...
The differentially expressed transcripts from either the csrA or badR mutant vs. wild-type parent we...
<p><b>A.</b> The metaplot depicts the enrichment pattern of H3K4 trimethylation (H3K4me3), H3K36 tri...
Normalized ChIP-seq datasets for visualization in IGV. The tracks contain means of pooled replicate ...
<p>(<b>A</b>). The number of genes induced (left) or repressed (right) with fold change values by co...
<p>(<b>A</b>) RNA-seq of wild-type (wt), <i>Suz12<sup>GT</sup></i>, <i>Suz12<sup>Δ</sup></i>, and <i...
Supplementary Material data for 'Trichoderma atroviride hyphal regeneration and conidiation depend o...
(A) ER stress assay of U. maydis strain JB1 (WT), JB1Δcib1 and UVO151 (Pcrg:clp1). Serial 10-fold di...
<p>“MoSET1-dependent genes” were defined based on a comparison of FC values (germination tubes [GT]/...
<p>(A)-(B) Genes were separated into groups of 100 genes according to their expression levels from h...
<p>(<b>A, B</b>) Overlap of data sets for genes that are preferentially enriched for H3K4Me3 and hav...
<p>(A) Dot plot representing differentially expressed genes in NTKO and TKO cells from the microarra...
<p>(A) Schematic representation of the position in which sRNAs mapped to the selected genes. Each ba...
<p>(A) Leaf explants (left) and calli (right) were used for the ChIP-chip experiment. For preparatio...
<p>(<b>A</b>) Overlap of called genes identifies subsets of genes that are preferentially enriched f...
<p>(A) Scatter plots displaying expression levels of each gene (dots) in <i>rim101∆</i> strains rela...
The differentially expressed transcripts from either the csrA or badR mutant vs. wild-type parent we...
<p><b>A.</b> The metaplot depicts the enrichment pattern of H3K4 trimethylation (H3K4me3), H3K36 tri...
Normalized ChIP-seq datasets for visualization in IGV. The tracks contain means of pooled replicate ...
<p>(<b>A</b>). The number of genes induced (left) or repressed (right) with fold change values by co...
<p>(<b>A</b>) RNA-seq of wild-type (wt), <i>Suz12<sup>GT</sup></i>, <i>Suz12<sup>Δ</sup></i>, and <i...
Supplementary Material data for 'Trichoderma atroviride hyphal regeneration and conidiation depend o...
(A) ER stress assay of U. maydis strain JB1 (WT), JB1Δcib1 and UVO151 (Pcrg:clp1). Serial 10-fold di...