Additional file 1: Figure S1. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Additional file 6: of Identification of TCERG1 as a new genetic modulator of TDP-43 production in Drosophila

Marine Pons (6080936)
Silvia Prieto (6080939)
Laetitia Miguel (1313112)
Thierry Frebourg (377898)
Dominique Campion (577036)
Carles SuĂąĂŠ (6080942)
Magalie Lecourtois (1313106)

December 2018

Figure S4. Homology TCERG1 and CG42724. Alignment of the human TCERG1 and Drosophila CG42724 protein...

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.

Kaushal, A.
Mohana, G.
Dorier, J.
Özdemir, I.
Omer, A.
Cousin, P.
Semenova, A.
Taschner, M.
Dergai, O.
Marzetta, F.
Iseli, C.
Eliaz, Y.
Weisz, D.
Shamim, M.S.
Guex, N.
Lieberman Aiden, E.
Gambetta, M.C.

February 2021

Vertebrate genomes are partitioned into contact domains defined by enhanced internal contact frequen...

Additional file 3: of Evolution of salivary glue genes in Drosophila species

Jean-Luc Da Lage (92386)
Gregg Thomas (2097718)
Magalie Bonneau (6276206)
Virginie Courtier-Orgogozo (3428948)

January 2019

Figure S2. Partial alignment of Sgs3 sequences with translation in D. melanogaster individuals. EF: ...

Additional file 2: Figure S2. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Artem Bonchuk (3452153)
Oksana Maksimenko (406628)
Olga Kyrchanova (406623)
Tatyana Ivlieva (430964)
Vladic Mogila (3152391)
Girish Deshpande (211751)
Daniel Wolle (3152388)
Paul Schedl (115354)
Pavel Georgiev (406629)

August 2015

(A) Glutaraldehyde cross-linking of different dCTCF N-terminal derivatives as indicated (see also sc...

Additional file 7: Figure S6. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Artem Bonchuk (3452153)
Oksana Maksimenko (406628)
Olga Kyrchanova (406623)
Tatyana Ivlieva (430964)
Vladic Mogila (3152391)
Girish Deshpande (211751)
Daniel Wolle (3152388)
Paul Schedl (115354)
Pavel Georgiev (406629)

August 2015

Western blots of protein extracts prepared from wild-type (wt; y 1 w 1118 ) and homozygous GE24185 m...

Additional file 6: Figure S5. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Artem Bonchuk (3452153)
Oksana Maksimenko (406628)
Olga Kyrchanova (406623)
Tatyana Ivlieva (430964)
Vladic Mogila (3152391)
Girish Deshpande (211751)
Daniel Wolle (3152388)
Paul Schedl (115354)
Pavel Georgiev (406629)

August 2015

Histograms showing dCTCF occupancy in chromatin isolated from mid-late pupa at sequences correspondi...

Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Bonchuk, Artem
Maksimenko, Oksana
Kyrchanova, Olga
Ivlieva, Tatyana
Mogila, Vladic
Deshpande, Girish
Wolle, Daniel
Schedl, Paul
Georgiev, Pavel

August 2015

Insulators play a central role in gene regulation, chromosomal architecture and genome function in h...

Additional file 5: Figure S2. of Functional diversity of CTCFs is encoded in their binding motifs

Rongxin Fang (3507332)
Chengqi Wang (849894)
Geir Skogerbo (3507335)
Zhihua Zhang (16756)

August 2015

The binding affinities among CTCF-A, CTCF-B, CTCF-C differ significantly. (PDF 33Â kb

Additional file 1: Figure S1. of cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers

Jermaine Ross (271038)
Alexander Kuzin (32925)
Thomas Brody (32922)
Ward Odenwald (3528836)

September 2015

Three-way alignment of ultraconserved sequences in conserved sequence clusters identified in Drosoph...

Additional file 3: Figure S3. of cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers

Jermaine Ross (271038)
Alexander Kuzin (32925)
Thomas Brody (32922)
Ward Odenwald (3528836)

September 2015

Resolution of conserved sequence clusters is enhanced by evolutionary flexibility in their flanking ...

Additional file 1 of Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

Nuria Rius (3439280)
Yolanda GuillĂŠn (3439286)
Alejandra Delprat (257181)
AurĂŠlie Kapusta (3439283)
CĂŠdric Feschotte (3439277)
Alfredo Ruiz (257186)

May 2016

Supplementary Figures. Supplementary Figure 1 (a to h). Chromosomal TE density. Main transposable el...

Additional file 2: of The crystal structure of JNK from Drosophila melanogaster reveals an evolutionarily conserved topology with that of mammalian JNK proteins

Sarin Chimnaronk (199226)
Jatuporn Sitthiroongruang (3549191)
Kanokporn Srisucharitpanit (3549185)
Monrudee Srisaisup (3549182)
Albert Ketterman (3549188)
Panadda Boonserm (3164580)

September 2015

Pairwise sequence alignment of mammalian JIP1 and Drosophila melanogaster APLIP1 [UniProt:Q9UQF2 and...

Additional file 1: of The crystal structure of JNK from Drosophila melanogaster reveals an evolutionarily conserved topology with that of mammalian JNK proteins

Sarin Chimnaronk (199226)
Jatuporn Sitthiroongruang (3549191)
Kanokporn Srisucharitpanit (3549185)
Monrudee Srisaisup (3549182)
Albert Ketterman (3549188)
Panadda Boonserm (3164580)

September 2015

Structure-based sequence alignment of DJNK, mammalian JNK1, JNK2, and JNK3. (DOCX 46Â kb

Additional file 3: Figure S1. of Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila

Mark Hanson (591919)
Phineas Hamilton (3293172)
Steve Perlman (3268131)

October 2016

Phylogenetic analysis of PGRP-SC1 and SC2 amino acid sequences using maximum likelihood. Support val...

Additional file 8: Figure S4. of Functional diversity of CTCFs is encoded in their binding motifs

Rongxin Fang (3507332)
Chengqi Wang (849894)
Geir Skogerbo (3507335)
Zhihua Zhang (16756)

August 2015

Distribution of the three CTCF motif variations in promoter, intergenic and intragenic regions. (TIF...

Additional file 6: of Identification of TCERG1 as a new genetic modulator of TDP-43 production in Drosophila

Marine Pons (6080936)
Silvia Prieto (6080939)
Laetitia Miguel (1313112)
Thierry Frebourg (377898)
Dominique Campion (577036)
Carles SuĂąĂŠ (6080942)
Magalie Lecourtois (1313106)

December 2018

Figure S4. Homology TCERG1 and CG42724. Alignment of the human TCERG1 and Drosophila CG42724 protein...

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.

Kaushal, A.
Mohana, G.
Dorier, J.
Özdemir, I.
Omer, A.
Cousin, P.
Semenova, A.
Taschner, M.
Dergai, O.
Marzetta, F.
Iseli, C.
Eliaz, Y.
Weisz, D.
Shamim, M.S.
Guex, N.
Lieberman Aiden, E.
Gambetta, M.C.

February 2021

Vertebrate genomes are partitioned into contact domains defined by enhanced internal contact frequen...

Additional file 3: of Evolution of salivary glue genes in Drosophila species

Jean-Luc Da Lage (92386)
Gregg Thomas (2097718)
Magalie Bonneau (6276206)
Virginie Courtier-Orgogozo (3428948)

January 2019

Figure S2. Partial alignment of Sgs3 sequences with translation in D. melanogaster individuals. EF: ...

Additional file 2: Figure S2. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Artem Bonchuk (3452153)
Oksana Maksimenko (406628)
Olga Kyrchanova (406623)
Tatyana Ivlieva (430964)
Vladic Mogila (3152391)
Girish Deshpande (211751)
Daniel Wolle (3152388)
Paul Schedl (115354)
Pavel Georgiev (406629)

August 2015

(A) Glutaraldehyde cross-linking of different dCTCF N-terminal derivatives as indicated (see also sc...

Additional file 7: Figure S6. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Artem Bonchuk (3452153)
Oksana Maksimenko (406628)
Olga Kyrchanova (406623)
Tatyana Ivlieva (430964)
Vladic Mogila (3152391)
Girish Deshpande (211751)
Daniel Wolle (3152388)
Paul Schedl (115354)
Pavel Georgiev (406629)

August 2015

Western blots of protein extracts prepared from wild-type (wt; y 1 w 1118 ) and homozygous GE24185 m...

Additional file 6: Figure S5. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Artem Bonchuk (3452153)
Oksana Maksimenko (406628)
Olga Kyrchanova (406623)
Tatyana Ivlieva (430964)
Vladic Mogila (3152391)
Girish Deshpande (211751)
Daniel Wolle (3152388)
Paul Schedl (115354)
Pavel Georgiev (406629)

August 2015

Histograms showing dCTCF occupancy in chromatin isolated from mid-late pupa at sequences correspondi...

Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Bonchuk, Artem
Maksimenko, Oksana
Kyrchanova, Olga
Ivlieva, Tatyana
Mogila, Vladic
Deshpande, Girish
Wolle, Daniel
Schedl, Paul
Georgiev, Pavel

August 2015

Insulators play a central role in gene regulation, chromosomal architecture and genome function in h...

Additional file 5: Figure S2. of Functional diversity of CTCFs is encoded in their binding motifs

Rongxin Fang (3507332)
Chengqi Wang (849894)
Geir Skogerbo (3507335)
Zhihua Zhang (16756)

August 2015

The binding affinities among CTCF-A, CTCF-B, CTCF-C differ significantly. (PDF 33Â kb

Additional file 1: Figure S1. of cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers

Jermaine Ross (271038)
Alexander Kuzin (32925)
Thomas Brody (32922)
Ward Odenwald (3528836)

September 2015

Three-way alignment of ultraconserved sequences in conserved sequence clusters identified in Drosoph...

Additional file 3: Figure S3. of cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers

Jermaine Ross (271038)
Alexander Kuzin (32925)
Thomas Brody (32922)
Ward Odenwald (3528836)

September 2015

Resolution of conserved sequence clusters is enhanced by evolutionary flexibility in their flanking ...

Additional file 1 of Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

Nuria Rius (3439280)
Yolanda GuillĂŠn (3439286)
Alejandra Delprat (257181)
AurĂŠlie Kapusta (3439283)
CĂŠdric Feschotte (3439277)
Alfredo Ruiz (257186)

May 2016

Supplementary Figures. Supplementary Figure 1 (a to h). Chromosomal TE density. Main transposable el...

Additional file 2: of The crystal structure of JNK from Drosophila melanogaster reveals an evolutionarily conserved topology with that of mammalian JNK proteins

Sarin Chimnaronk (199226)
Jatuporn Sitthiroongruang (3549191)
Kanokporn Srisucharitpanit (3549185)
Monrudee Srisaisup (3549182)
Albert Ketterman (3549188)
Panadda Boonserm (3164580)

September 2015

Pairwise sequence alignment of mammalian JIP1 and Drosophila melanogaster APLIP1 [UniProt:Q9UQF2 and...

Additional file 1: of The crystal structure of JNK from Drosophila melanogaster reveals an evolutionarily conserved topology with that of mammalian JNK proteins

Sarin Chimnaronk (199226)
Jatuporn Sitthiroongruang (3549191)
Kanokporn Srisucharitpanit (3549185)
Monrudee Srisaisup (3549182)
Albert Ketterman (3549188)
Panadda Boonserm (3164580)

September 2015

Structure-based sequence alignment of DJNK, mammalian JNK1, JNK2, and JNK3. (DOCX 46Â kb

Additional file 3: Figure S1. of Immune genes and divergent antimicrobial peptides in flies of the subgenus Drosophila

Mark Hanson (591919)
Phineas Hamilton (3293172)
Steve Perlman (3268131)

October 2016

Phylogenetic analysis of PGRP-SC1 and SC2 amino acid sequences using maximum likelihood. Support val...

Additional file 8: Figure S4. of Functional diversity of CTCFs is encoded in their binding motifs

Rongxin Fang (3507332)
Chengqi Wang (849894)
Geir Skogerbo (3507335)
Zhihua Zhang (16756)

August 2015

Distribution of the three CTCF motif variations in promoter, intergenic and intragenic regions. (TIF...

Additional file 6: of Identification of TCERG1 as a new genetic modulator of TDP-43 production in Drosophila

Marine Pons (6080936)
Silvia Prieto (6080939)
Laetitia Miguel (1313112)
Thierry Frebourg (377898)
Dominique Campion (577036)
Carles SuĂąĂŠ (6080942)
Magalie Lecourtois (1313106)

December 2018

Figure S4. Homology TCERG1 and CG42724. Alignment of the human TCERG1 and Drosophila CG42724 protein...

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions.

Kaushal, A.
Mohana, G.
Dorier, J.
Özdemir, I.
Omer, A.
Cousin, P.
Semenova, A.
Taschner, M.
Dergai, O.
Marzetta, F.
Iseli, C.
Eliaz, Y.
Weisz, D.
Shamim, M.S.
Guex, N.
Lieberman Aiden, E.
Gambetta, M.C.

February 2021

Vertebrate genomes are partitioned into contact domains defined by enhanced internal contact frequen...

Additional file 3: of Evolution of salivary glue genes in Drosophila species

Jean-Luc Da Lage (92386)
Gregg Thomas (2097718)
Magalie Bonneau (6276206)
Virginie Courtier-Orgogozo (3428948)

January 2019

Figure S2. Partial alignment of Sgs3 sequences with translation in D. melanogaster individuals. EF: ...

Additional file 1: Figure S1. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Abstract

Extracted data

Additional file 1: Figure S1. of Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster

Abstract

Extracted data

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