Additional file 2: of Invaders, natives and their enemies: distribution patterns of amphipods and their microsporidian parasites in the Ruhr Metropolis, Germany

Daniel Grabner (584168)
Alexander Weigand (3430718)
Florian Leese (116979)
Caroline Winking (3430715)
Daniel Hering (761574)
Ralph Tollrian (117026)
Bernd Sures (522025)

Publication date

August 2015

DOI

10.6084/m9.figshare.c.3603428_d3.v1

Abstract

Genetic data of host amphipod species. Given are the number of specimens (N), number of haplotypes (H), haplotype diversity (Hd) and genetic diversity (π); sd = standard deviation. (PDF 262 kb

Extracted data

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Additional file 2: of Invaders, natives and their enemies: distribution patterns of amphipods and their microsporidian parasites in the Ruhr Metropolis, Germany

Daniel Grabner (584168)
Alexander Weigand (3430718)
Florian Leese (116979)
Caroline Winking (3430715)
Daniel Hering (761574)
Ralph Tollrian (117026)
Bernd Sures (522025)

Open link

Publication date

August 2015

DOI

10.6084/m9.figshare.c.3603428_d3.v1

Abstract

Genetic data of host amphipod species. Given are the number of specimens (N), number of haplotypes (H), haplotype diversity (Hd) and genetic diversity (π); sd = standard deviation. (PDF 262 kb

Extracted data

Pengjun Xu (478144)
Bin Lu (65603)
Jinyan Liu (580919)
Jiangtao Chao (6110081)
Philip Donkersley (3258195)
Robert Holdbrook (6192818)
Yanhui Lu (332793)

January 2019

Figure S1. The discription of RNA-seq in Adelphocoris suturalis. (a) The distribution of sequences l...

Additional file 7: Table S4. of Pleistocene sea level fluctuation and host plant habitat requirement influenced the historical phylogeography of the invasive species Amphiareus obscuriceps (Hemiptera: Anthocoridae) in its native range

Danli Zhang (3267393)
Zhen Ye (411620)
Kazutaka Yamada (45698)
Yahui Zhen (3549374)
Chenguang Zheng (589278)
Wenjun Bu (108100)

August 2016

Nucleotide polymorphisms in each geographic population. S, number of segregating sites; NHap, number...

Additional file 1: Table S1. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Primer pairs and multiplex panels for 11 microsatellite loci applied in Fascioloides magna genotypin...

Additional file 3: Table S2. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Summary of statistical parameters for 11 microsatellite loci of Fascioloides magna from North Americ...

Additional file 4: Figure S1. of Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region

Enrique GonzĂĄlez-Tortuero (3514505)
Jakub Rusek (3267750)
Inbar Maayan (3340872)
Adam Petrusek (219109)
LubomĂr PiĂĄlek (3514502)
Stefan Laurent (380673)
Justyna Wolinska (701777)

May 2016

Haplotype network of the most abundant ITS representative sequences of Berwaldia. Each red circle re...

Additional file 3: of Gyrodactylus spp. diversity in native and introduced minnow (Phoxinus phoxinus) populations: no support for “the enemy release” hypothesis

Ruben Pettersen (3552527)
Kjartan Østbye (635882)
Johannes Holmen (3552530)
Leif Vøllestad (3300141)
Tor Mo (3479432)

January 2016

Figure of distribution of Gyrodactylus spp. individuals. Distribution of Gyrodactylus spp. individua...

Additional file 5: of Signatures of co-evolutionary host-pathogen interactions in the genome of the entomopathogenic nematode Steinernema carpocapsae

Mitzi Flores-Ponce (3964253)
Miguel Vallebueno-Estrada (3964259)
Eduardo González-Orozco (3964256)
Hilda Ramos-Aboites (3964250)
J. García-Chávez (3964247)
Nelson Simões (167444)
Rafael Montiel (105160)

April 2017

Over-represented unique GO terms in genes with sites under positive selection. a-b, enriched GO term...

Additional file 2: of Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites

Maria Onyango (3460817)
Nigel Beebe (3551006)
David Gopurenko (235638)
Glenn Bellis (3479177)
Adrian Nicholas (3552827)
Moses Ogugo (3460823)
Appolinaire Djikeng (41915)
Steve Kemp (242147)
Peter Walker (712753)
Jean-Bernard Duchemin (92226)

September 2015

C. brevitarsis primer optimization. A subset of 38 primers was used to amplify 10 individuals. Twelv...

Additional file 2: of Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus

Stephen Doyle (1420624)
Christopher Illingworth (6472265)
Roz Laing (183493)
David Bartley (3028725)
Elizabeth Redman (183534)
Axel Martinelli (252562)
Nancy Holroyd (192338)
Alison Morrison (183550)
Andrew Rezansoff (6472268)
Alan Tracey (6472271)
Eileen Devaney (364093)
Matthew Berriman (5353)
Neil Sargison (183538)
James Cotton (27635)
John Gilleard (3400712)

March 2019

Figure S2. Distribution of âprivateâ variant sites per parental population. A. MHco3(ISE). B. MH...

Additional file 2: Supplementary Data of Genome-wide discovery and development of polymorphic microsatellites from Leishmania panamensis parasites circulating in central Panama

Carlos Restrepo (3475712)
Alejandro Llanes (3149481)
Carolina Guardia (3475715)
Ricardo Lleonart (455751)

October 2015

TableÂ S1.Â Perfect microsatellite loci found in L. panamensis genome. Table S2. Specificity of new...

Additional file 2: of Genetic diversity of Leishmania donovani that causes cutaneous leishmaniasis in Sri Lanka: a cross sectional study with regional comparisons

Udeshika Kariyawasam (4716279)
Angamuthu Selvapandiyan (132916)
Keshav Rai (781272)
Tasaduq Wani (4716276)
Kavita Ahuja (4716267)
Mizra Beg (4716285)
Hasitha Premathilake (4716270)
Narayan Bhattarai (49643)
Yamuna Siriwardena (4716273)
Daibin Zhong (63683)
Guofa Zhou (34790)
Suman Rijal (181185)
Hira Nakhasi (4716282)
Nadira Karunaweera (762997)

December 2017

The isolation by distance analysis showed the linear correlation between genetic diversity and geogr...

Additional file 2: of The Amblyomma maculatum Koch, 1844 (Acari: Ixodidae) group of ticks: phenotypic plasticity or incipient speciation?

Paula Lado (6032147)
Santiago Nava (6032150)
Leonardo Mendoza-Uribe (6032153)
Abraham Caceres (6032156)
Jesus Delgado-de la Mora (6032159)
Jesus Licona-Enriquez (6032162)
David Delgado-de la Mora (6032165)
Marcelo Labruna (3428384)
Lance Durden (6032168)
Michelle Allerdice (6032171)
Christopher Paddock (6032174)
Matias SzabĂł (6032177)
JosĂŠ Venzal (6032180)
Alberto Guglielmone (6032186)
Lorenza Beati (6032189)

November 2018

Table S2. Geographical distribution of the 16S rDNA haplotypes. Abbreviations: PI, Piura; TU, Tumbes...

Additional file 1: of Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus

Stephen Doyle (1420624)
Christopher Illingworth (6472265)
Roz Laing (183493)
David Bartley (3028725)
Elizabeth Redman (183534)
Axel Martinelli (252562)
Nancy Holroyd (192338)
Alison Morrison (183550)
Andrew Rezansoff (6472268)
Alan Tracey (6472271)
Eileen Devaney (364093)
Matthew Berriman (5353)
Neil Sargison (183538)
James Cotton (27635)
John Gilleard (3400712)

March 2019

Figure S1. Characterisation of within-population diversity. A. Within population nucleotide diversit...

Additional file 2: of Duplication and expression of horizontally transferred polygalacturonase genes is associated with host range expansion of mirid bugs

Pengjun Xu (478144)
Bin Lu (65603)
Jinyan Liu (580919)
Jiangtao Chao (6110081)
Philip Donkersley (3258195)
Robert Holdbrook (6192818)
Yanhui Lu (332793)

January 2019

Figure S1. The discription of RNA-seq in Adelphocoris suturalis. (a) The distribution of sequences l...

Danli Zhang (3267393)
Zhen Ye (411620)
Kazutaka Yamada (45698)
Yahui Zhen (3549374)
Chenguang Zheng (589278)
Wenjun Bu (108100)

August 2016

Nucleotide polymorphisms in each geographic population. S, number of segregating sites; NHap, number...

Additional file 1: Table S1. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Primer pairs and multiplex panels for 11 microsatellite loci applied in Fascioloides magna genotypin...

Additional file 3: Table S2. of Population structure and dispersal routes of an invasive parasite, Fascioloides magna, in North America and Europe

Ludmila Juhásová (3427223)
Ivica Králová-Hromadová (3427220)
Eva Bazsalovicsová (3427217)
Gabriel Minárik (286141)
Jan Štefka (590815)
Peter Mikulíček (3247785)
Lenka Pálková (3427214)
Margo Pybus (811657)

October 2016

Summary of statistical parameters for 11 microsatellite loci of Fascioloides magna from North Americ...

Additional file 4: Figure S1. of Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region

Enrique GonzĂĄlez-Tortuero (3514505)
Jakub Rusek (3267750)
Inbar Maayan (3340872)
Adam Petrusek (219109)
LubomĂr PiĂĄlek (3514502)
Stefan Laurent (380673)
Justyna Wolinska (701777)

May 2016

Haplotype network of the most abundant ITS representative sequences of Berwaldia. Each red circle re...

Additional file 3: of Gyrodactylus spp. diversity in native and introduced minnow (Phoxinus phoxinus) populations: no support for “the enemy release” hypothesis

Ruben Pettersen (3552527)
Kjartan Østbye (635882)
Johannes Holmen (3552530)
Leif Vøllestad (3300141)
Tor Mo (3479432)

January 2016

Figure of distribution of Gyrodactylus spp. individuals. Distribution of Gyrodactylus spp. individua...

Additional file 5: of Signatures of co-evolutionary host-pathogen interactions in the genome of the entomopathogenic nematode Steinernema carpocapsae

Mitzi Flores-Ponce (3964253)
Miguel Vallebueno-Estrada (3964259)
Eduardo González-Orozco (3964256)
Hilda Ramos-Aboites (3964250)
J. García-Chávez (3964247)
Nelson Simões (167444)
Rafael Montiel (105160)

April 2017

Over-represented unique GO terms in genes with sites under positive selection. a-b, enriched GO term...

Additional file 2: of Assessment of population genetic structure in the arbovirus vector midge, Culicoides brevitarsis (Diptera: Ceratopogonidae), using multi-locus DNA microsatellites

Maria Onyango (3460817)
Nigel Beebe (3551006)
David Gopurenko (235638)
Glenn Bellis (3479177)
Adrian Nicholas (3552827)
Moses Ogugo (3460823)
Appolinaire Djikeng (41915)
Steve Kemp (242147)
Peter Walker (712753)
Jean-Bernard Duchemin (92226)

September 2015

C. brevitarsis primer optimization. A subset of 38 primers was used to amplify 10 individuals. Twelv...

Additional file 2: of Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus

Stephen Doyle (1420624)
Christopher Illingworth (6472265)
Roz Laing (183493)
David Bartley (3028725)
Elizabeth Redman (183534)
Axel Martinelli (252562)
Nancy Holroyd (192338)
Alison Morrison (183550)
Andrew Rezansoff (6472268)
Alan Tracey (6472271)
Eileen Devaney (364093)
Matthew Berriman (5353)
Neil Sargison (183538)
James Cotton (27635)
John Gilleard (3400712)

March 2019

Figure S2. Distribution of âprivateâ variant sites per parental population. A. MHco3(ISE). B. MH...

Additional file 2: Supplementary Data of Genome-wide discovery and development of polymorphic microsatellites from Leishmania panamensis parasites circulating in central Panama

Carlos Restrepo (3475712)
Alejandro Llanes (3149481)
Carolina Guardia (3475715)
Ricardo Lleonart (455751)

October 2015

TableÂ S1.Â Perfect microsatellite loci found in L. panamensis genome. Table S2. Specificity of new...

Additional file 2: of Genetic diversity of Leishmania donovani that causes cutaneous leishmaniasis in Sri Lanka: a cross sectional study with regional comparisons

Udeshika Kariyawasam (4716279)
Angamuthu Selvapandiyan (132916)
Keshav Rai (781272)
Tasaduq Wani (4716276)
Kavita Ahuja (4716267)
Mizra Beg (4716285)
Hasitha Premathilake (4716270)
Narayan Bhattarai (49643)
Yamuna Siriwardena (4716273)
Daibin Zhong (63683)
Guofa Zhou (34790)
Suman Rijal (181185)
Hira Nakhasi (4716282)
Nadira Karunaweera (762997)

December 2017

The isolation by distance analysis showed the linear correlation between genetic diversity and geogr...

Additional file 2: of The Amblyomma maculatum Koch, 1844 (Acari: Ixodidae) group of ticks: phenotypic plasticity or incipient speciation?

Paula Lado (6032147)
Santiago Nava (6032150)
Leonardo Mendoza-Uribe (6032153)
Abraham Caceres (6032156)
Jesus Delgado-de la Mora (6032159)
Jesus Licona-Enriquez (6032162)
David Delgado-de la Mora (6032165)
Marcelo Labruna (3428384)
Lance Durden (6032168)
Michelle Allerdice (6032171)
Christopher Paddock (6032174)
Matias SzabĂł (6032177)
JosĂŠ Venzal (6032180)
Alberto Guglielmone (6032186)
Lorenza Beati (6032189)

November 2018

Table S2. Geographical distribution of the 16S rDNA haplotypes. Abbreviations: PI, Piura; TU, Tumbes...

Additional file 1: of Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus

Stephen Doyle (1420624)
Christopher Illingworth (6472265)
Roz Laing (183493)
David Bartley (3028725)
Elizabeth Redman (183534)
Axel Martinelli (252562)
Nancy Holroyd (192338)
Alison Morrison (183550)
Andrew Rezansoff (6472268)
Alan Tracey (6472271)
Eileen Devaney (364093)
Matthew Berriman (5353)
Neil Sargison (183538)
James Cotton (27635)
John Gilleard (3400712)

March 2019

Figure S1. Characterisation of within-population diversity. A. Within population nucleotide diversit...

Additional file 2: of Duplication and expression of horizontally transferred polygalacturonase genes is associated with host range expansion of mirid bugs

Pengjun Xu (478144)
Bin Lu (65603)
Jinyan Liu (580919)
Jiangtao Chao (6110081)
Philip Donkersley (3258195)
Robert Holdbrook (6192818)
Yanhui Lu (332793)

January 2019

Figure S1. The discription of RNA-seq in Adelphocoris suturalis. (a) The distribution of sequences l...

Danli Zhang (3267393)
Zhen Ye (411620)
Kazutaka Yamada (45698)
Yahui Zhen (3549374)
Chenguang Zheng (589278)
Wenjun Bu (108100)

August 2016

Nucleotide polymorphisms in each geographic population. S, number of segregating sites; NHap, number...

Additional file 2: of Invaders, natives and their enemies: distribution patterns of amphipods and their microsporidian parasites in the Ruhr Metropolis, Germany

Abstract

Extracted data

Additional file 2: of Invaders, natives and their enemies: distribution patterns of amphipods and their microsporidian parasites in the Ruhr Metropolis, Germany

Abstract

Extracted data

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