Over-represented unique GO terms in genes with sites under positive selection. a-b, enriched GO terms by lifestyle and d-h by species. a, parasites from clade IV; b parasites from clade V; c, free living in clade IV; d Steinernema carpocapsae; e, Strongyloides ratti; f, Panagrellus redivivus; g, Heterorhabditis bacteriophora; h, Haemonchus contortus. Biological process in green, molecular function in blue, and cellular component in yellow. Enrichment analyses were performed with Blast2GO with a Fisher’s exact test [65]. (PDF 213 kb
An unrooted maximum likelihood phylogeny for the Nematode-Specific Peptide family, group D (NSPD). G...
Gene match results for transcriptomes from Haemonchus contortus, Strongyloides ratti and Trichuris s...
Table S6. Nematode isotypes and selection. Hg-types, selection, and heritage of nematodes using in s...
Functional annotation of S. carpocapsae genes with sites evolving under positive selection. Donut ch...
Enriched GO terms in the genes with sites under positive selection in nematode clade IV. (XLSX 13 kb
Genes for differentially expressed proteins with sites under positive selection or significant Tajim...
Differentially expressed proteins in S. carpocapsae infective juveniles induced with insect tissues....
S. carpocapsae and S. feltiae orthologs with conserved expression (cosine similarity > 0.95). Lists ...
Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...
Figure S1. Contamination check with Blobtools. Circles represent scaffolds, while their colors repre...
S. carpocapsae and C. elegans shared GO term table. Contains all the motif-associated GO (MAG) terms...
Data S1. MEME motifs annotated with BLAST annotations to NR. Annotated MEME motifs from effector mot...
Table S6. Complete list of histones and histone modifying enzymes annotation. In the 6 model species...
Additional file 1: Figure S1 - BlobTools-based interrogation of genome assembly of Gr-Line 19 to ver...
Table S1. Results of selection tests on Leishmania. PARRIS [65] searches for evidence of positive se...
An unrooted maximum likelihood phylogeny for the Nematode-Specific Peptide family, group D (NSPD). G...
Gene match results for transcriptomes from Haemonchus contortus, Strongyloides ratti and Trichuris s...
Table S6. Nematode isotypes and selection. Hg-types, selection, and heritage of nematodes using in s...
Functional annotation of S. carpocapsae genes with sites evolving under positive selection. Donut ch...
Enriched GO terms in the genes with sites under positive selection in nematode clade IV. (XLSX 13 kb
Genes for differentially expressed proteins with sites under positive selection or significant Tajim...
Differentially expressed proteins in S. carpocapsae infective juveniles induced with insect tissues....
S. carpocapsae and S. feltiae orthologs with conserved expression (cosine similarity > 0.95). Lists ...
Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...
Figure S1. Contamination check with Blobtools. Circles represent scaffolds, while their colors repre...
S. carpocapsae and C. elegans shared GO term table. Contains all the motif-associated GO (MAG) terms...
Data S1. MEME motifs annotated with BLAST annotations to NR. Annotated MEME motifs from effector mot...
Table S6. Complete list of histones and histone modifying enzymes annotation. In the 6 model species...
Additional file 1: Figure S1 - BlobTools-based interrogation of genome assembly of Gr-Line 19 to ver...
Table S1. Results of selection tests on Leishmania. PARRIS [65] searches for evidence of positive se...
An unrooted maximum likelihood phylogeny for the Nematode-Specific Peptide family, group D (NSPD). G...
Gene match results for transcriptomes from Haemonchus contortus, Strongyloides ratti and Trichuris s...
Table S6. Nematode isotypes and selection. Hg-types, selection, and heritage of nematodes using in s...