Functional annotation of S. carpocapsae genes with sites evolving under positive selection. Donut chart showing the GO term distribution at level 4 for biological process (BP), molecular function (MF), and cellular component (CC). GO analysis was performed using Blast2GO [65]. (PDF 458 kb
Functional analysis of genes carrying non-synonymous and synonymous SNPs. a nsSNPs. b sSNPs. Genes c...
Statistically significant overâ/under-representation of pfam functional annotations between pathog...
Example of structural variations. A part of paired scaffolds (GBrowse screen capture) is shown. The ...
Over-represented unique GO terms in genes with sites under positive selection. a-b, enriched GO term...
Enriched GO terms in the genes with sites under positive selection in nematode clade IV. (XLSX 13 kb
Genes for differentially expressed proteins with sites under positive selection or significant Tajim...
Differentially expressed proteins in S. carpocapsae infective juveniles induced with insect tissues....
S. carpocapsae and C. elegans shared GO term table. Contains all the motif-associated GO (MAG) terms...
Figure S2. Annotation of DEGs with Blast2GO into functional categories. All (a), upregulated (b) and...
Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...
S. carpocapsae and S. feltiae orthologs with conserved expression (cosine similarity > 0.95). Lists ...
S. carpocapsae and C. elegans predicted regulatory motifs GO term enrichments. Thirty significant, n...
Data S1. MEME motifs annotated with BLAST annotations to NR. Annotated MEME motifs from effector mot...
Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Functional analysis of genes carrying non-synonymous and synonymous SNPs. a nsSNPs. b sSNPs. Genes c...
Statistically significant overâ/under-representation of pfam functional annotations between pathog...
Example of structural variations. A part of paired scaffolds (GBrowse screen capture) is shown. The ...
Over-represented unique GO terms in genes with sites under positive selection. a-b, enriched GO term...
Enriched GO terms in the genes with sites under positive selection in nematode clade IV. (XLSX 13 kb
Genes for differentially expressed proteins with sites under positive selection or significant Tajim...
Differentially expressed proteins in S. carpocapsae infective juveniles induced with insect tissues....
S. carpocapsae and C. elegans shared GO term table. Contains all the motif-associated GO (MAG) terms...
Figure S2. Annotation of DEGs with Blast2GO into functional categories. All (a), upregulated (b) and...
Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...
S. carpocapsae and S. feltiae orthologs with conserved expression (cosine similarity > 0.95). Lists ...
S. carpocapsae and C. elegans predicted regulatory motifs GO term enrichments. Thirty significant, n...
Data S1. MEME motifs annotated with BLAST annotations to NR. Annotated MEME motifs from effector mot...
Additional file 1: Supplementary table S1. Correlation coefficient between various replicates of the...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Functional analysis of genes carrying non-synonymous and synonymous SNPs. a nsSNPs. b sSNPs. Genes c...
Statistically significant overâ/under-representation of pfam functional annotations between pathog...
Example of structural variations. A part of paired scaffolds (GBrowse screen capture) is shown. The ...