Additional file 1: Table S1. of Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

Hongyan Sun (327879)
Peng Liu (120506)
Lisa Nolan (3531530)
Susan Lamont (340168)

Open link

Publication date

September 2015

DOI

10.6084/m9.figshare.c.3630137_d1.v1

Abstract

Primers sequence for qPCR validation. Table S2. Quantitative PCR validation. (XLSX 44 kb

Extracted data

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Additional file 1: Table S1. of Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

Hongyan Sun (327879)
Peng Liu (120506)
Lisa Nolan (3531530)
Susan Lamont (340168)

Open link

Publication date

September 2015

DOI

10.6084/m9.figshare.c.3630137_d1.v1

Abstract

Primers sequence for qPCR validation. Table S2. Quantitative PCR validation. (XLSX 44 kb

Extracted data

Yanhua Zhang (356457)
Yanting Zhou (4039313)
Guirong Sun (3571250)
Kui Li (48173)
Zhuanjian Li (108072)
Aru Su (6085199)
Xiaojun Liu (58952)
Guoxi Li (63063)
Ruirui Jiang (5090348)
Ruili Han (4408216)
Yadong Tian (3580121)
Xiangtao Kang (3580112)
Fengbin Yan (6085202)

December 2018

Table S10. List of the genes and primers used for qRT-PCR validation. (XLSX 12 kb

Additional file 1: of Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development

Dirkjan Schokker (579932)
Alfons Jansman (3849133)
Gosse Veninga (3849130)
Naomi de Bruin (3849136)
Stephanie Vastenhouw (3849139)
Freddy de Bree (3849127)
Alex Bossers (64605)
Johanna Rebel (299313)
Mari Smits (3122115)

March 2017

Full analysis of differential expressed genes. The Additional File (presented as.xlsx) contains mult...

Additional file 1: of Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes

Wenguang Xiong (4851646)
Yulin Wang (213752)
Yongxue Sun (4851643)
Liping Ma (502627)
Qinglin Zeng (4851649)
Xiaotao Jiang (191589)
Andong Li (4851652)
Zhenling Zeng (3404546)
Tong Zhang (103827)

February 2018

Figure S1. Animal groups and sampling time points. Figure S2. ARG types in chicken fecal metagenomes...

Additional file 2: of Transcriptional profiling of liver in riboflavin-deficient chicken embryos explains impaired lipid utilization, energy depletion, massive hemorrhaging, and delayed feathering

Larry Cogburn (3468785)
Danielle Smarsh (4913221)
Xiaofei Wang (135107)
Nares Trakooljul (723346)
Wilfrid Carré (86460)
Harold White (4913224)

March 2018

Primers used for qRT-PCR analysis. A Microsoft Excel file containing a single work sheet “qRT-PCR Pr...

Additional file 2: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

Larry Cogburn (3468785)
Nares Trakooljul (723346)
Chuming Chen (223254)
Hongzhan Huang (14342)
Cathy Wu (216122)
Wilfrid Carré (86460)
Xiaofei Wang (135107)
Harold White (4913224)

September 2018

Primers used for qRT-PCR analysis. A Microsoft Excel file containing a single work sheet “qRT-PCR Pr...

Additional file 2: Table S2. of Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

Leonardo Susta (2564860)
Ying He (125930)
Jessica Hutcheson (3534362)
Yangqing Lu (2608246)
Franklin West (3534365)
Steven Stice (3497057)
Ping Yu (215536)
Zaid Abdo (175649)
Claudio Afonso (41921)

December 2016

List of differentially expressed genes between BA3NI-I6 and BA3NI-I9-C1 (average of biological tripl...

Additional file 1: of Antibiotic-resistant Escherichia coli from retail poultry meat with different antibiotic use claims

Gregg Davis (5927210)
Kara Waits (426847)
Lora Nordstrom (5927213)
Heidi Grande (426848)
Brett Weaver (5927216)
Katerina Papp (5927219)
Joseph Horwinski (4805739)
Benjamin Koch (5093399)
Bruce Hungate (5927222)
Cindy Liu (5927225)
Lance Price (5927228)

November 2018

Table S1. Proportion of retail chicken (a) and turkey (b) samples contaminated with E. coli. (DOCX 8...

Additional file 8: of Immunomodulatory effects of heat stress and lipopolysaccharide on the bursal transcriptome in two distinct chicken lines

Melissa Monson (5704835)
Angelica Van Goor (3569357)
Christopher Ashwell (3569354)
Michael Persia (3569348)
Max Rothschild (3569351)
Carl Schmidt (3159513)
Susan Lamont (340168)

August 2018

Primers for qPCR validation of differential expression using the Biomark HD system. (DOCX 18 kb

Additional file 3: of Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marekâs disease

Lingyang Xu (389143)
Yanghua He (155475)
Yi Ding (172783)
George Liu (122581)
Huanmin Zhang (41829)
Hans Cheng (3418421)
Robert Taylor (226235)
Jiuzhou Song (41834)

November 2018

Table S2. The overlapping positions for 106 identified candidate regions with QTLs related to MD dis...

Additional file 2: of Revisiting avian âmissingâ genes from de novo assembled transcripts

Zhong-Tao Yin (6177539)
Feng Zhu (685)
Fang-Bin Lin (6177542)
Ting Jia (496916)
Zhen Wang (72451)
Dong-Ting Sun (6177545)
Guang-Shen Li (6177548)
Cheng-Lin Zhang (2432737)
Jacqueline Smith (16359)
Ning Yang (114965)
Zhuo-Cheng Hou (343897)

January 2019

Details of sequence validation and comparative genomics information. Table S11. List of primers used...

Additional file 1: Table S1. of Colonization of Enteroaggregative Escherichia coli and Shiga toxin-producing Escherichia coli in chickens and humans in southern Vietnam

Nguyen Trung (3471449)
Hoang Nhung (3471461)
Juan Carrique-Mas (3471458)
Ho Mai (3471467)
Ha Tuyen (3471464)
James Campbell (81613)
Nguyen Nhung (3471452)
Pham Van Minh (211349)
Jaap Wagenaar (308430)
Nguyen Mai (3471446)
Thai Hieu (3471443)
Constance Schultsz (96026)
Ngo Hoa (3471455)

September 2016

Patterns of antimicrobial resistance in EAEC and STEC isolated from humans in southern Vietnam. (XLS...

Additional file 2: Table S2. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The primer sequences used for qPCR analysis of the differentially expressed proteins of the liver of...

Additional file 1: Table S1. of RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

Edin Hamzić (3404822)
Rikke Kjærup (3404825)
Núria Mach (522344)
Guilietta Minozzi (3404819)
Francesco Strozzi (179781)
Valentina Gualdi (3404828)
John Williams (32544)
Jun Chen (4238)
Eva Wattrang (3404816)
Bart Buitenhuis (3404813)
Helle Juul-Madsen (3404834)
Tina Dalgaard (3404831)

January 2016

Summary of mapping statistics. Mapping statistics were obtained from TopHat2 and includes the number...

Additional file 14: of Transcriptome profile in bursa of Fabricius reveals potential mode for stress-influenced immune function in chicken stress model

Yanhua Zhang (356457)
Yanting Zhou (4039313)
Guirong Sun (3571250)
Kui Li (48173)
Zhuanjian Li (108072)
Aru Su (6085199)
Xiaojun Liu (58952)
Guoxi Li (63063)
Ruirui Jiang (5090348)
Ruili Han (4408216)
Yadong Tian (3580121)
Xiangtao Kang (3580112)
Fengbin Yan (6085202)

December 2018

Table S10. List of the genes and primers used for qRT-PCR validation. (XLSX 12 kb

Additional file 1: of Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development

Dirkjan Schokker (579932)
Alfons Jansman (3849133)
Gosse Veninga (3849130)
Naomi de Bruin (3849136)
Stephanie Vastenhouw (3849139)
Freddy de Bree (3849127)
Alex Bossers (64605)
Johanna Rebel (299313)
Mari Smits (3122115)

March 2017

Full analysis of differential expressed genes. The Additional File (presented as.xlsx) contains mult...

Additional file 1: of Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes

Wenguang Xiong (4851646)
Yulin Wang (213752)
Yongxue Sun (4851643)
Liping Ma (502627)
Qinglin Zeng (4851649)
Xiaotao Jiang (191589)
Andong Li (4851652)
Zhenling Zeng (3404546)
Tong Zhang (103827)

February 2018

Figure S1. Animal groups and sampling time points. Figure S2. ARG types in chicken fecal metagenomes...

Additional file 2: of Transcriptional profiling of liver in riboflavin-deficient chicken embryos explains impaired lipid utilization, energy depletion, massive hemorrhaging, and delayed feathering

Larry Cogburn (3468785)
Danielle Smarsh (4913221)
Xiaofei Wang (135107)
Nares Trakooljul (723346)
Wilfrid Carré (86460)
Harold White (4913224)

March 2018

Primers used for qRT-PCR analysis. A Microsoft Excel file containing a single work sheet “qRT-PCR Pr...

Additional file 2: of Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

Larry Cogburn (3468785)
Nares Trakooljul (723346)
Chuming Chen (223254)
Hongzhan Huang (14342)
Cathy Wu (216122)
Wilfrid Carré (86460)
Xiaofei Wang (135107)
Harold White (4913224)

September 2018

Primers used for qRT-PCR analysis. A Microsoft Excel file containing a single work sheet “qRT-PCR Pr...

Additional file 2: Table S2. of Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

Leonardo Susta (2564860)
Ying He (125930)
Jessica Hutcheson (3534362)
Yangqing Lu (2608246)
Franklin West (3534365)
Steven Stice (3497057)
Ping Yu (215536)
Zaid Abdo (175649)
Claudio Afonso (41921)

December 2016

List of differentially expressed genes between BA3NI-I6 and BA3NI-I9-C1 (average of biological tripl...

Additional file 1: of Antibiotic-resistant Escherichia coli from retail poultry meat with different antibiotic use claims

Gregg Davis (5927210)
Kara Waits (426847)
Lora Nordstrom (5927213)
Heidi Grande (426848)
Brett Weaver (5927216)
Katerina Papp (5927219)
Joseph Horwinski (4805739)
Benjamin Koch (5093399)
Bruce Hungate (5927222)
Cindy Liu (5927225)
Lance Price (5927228)

November 2018

Table S1. Proportion of retail chicken (a) and turkey (b) samples contaminated with E. coli. (DOCX 8...

Additional file 8: of Immunomodulatory effects of heat stress and lipopolysaccharide on the bursal transcriptome in two distinct chicken lines

Melissa Monson (5704835)
Angelica Van Goor (3569357)
Christopher Ashwell (3569354)
Michael Persia (3569348)
Max Rothschild (3569351)
Carl Schmidt (3159513)
Susan Lamont (340168)

August 2018

Primers for qPCR validation of differential expression using the Biomark HD system. (DOCX 18 kb

Additional file 3: of Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marekâs disease

Lingyang Xu (389143)
Yanghua He (155475)
Yi Ding (172783)
George Liu (122581)
Huanmin Zhang (41829)
Hans Cheng (3418421)
Robert Taylor (226235)
Jiuzhou Song (41834)

November 2018

Table S2. The overlapping positions for 106 identified candidate regions with QTLs related to MD dis...

Additional file 2: of Revisiting avian âmissingâ genes from de novo assembled transcripts

Zhong-Tao Yin (6177539)
Feng Zhu (685)
Fang-Bin Lin (6177542)
Ting Jia (496916)
Zhen Wang (72451)
Dong-Ting Sun (6177545)
Guang-Shen Li (6177548)
Cheng-Lin Zhang (2432737)
Jacqueline Smith (16359)
Ning Yang (114965)
Zhuo-Cheng Hou (343897)

January 2019

Details of sequence validation and comparative genomics information. Table S11. List of primers used...

Additional file 1: Table S1. of Colonization of Enteroaggregative Escherichia coli and Shiga toxin-producing Escherichia coli in chickens and humans in southern Vietnam

Nguyen Trung (3471449)
Hoang Nhung (3471461)
Juan Carrique-Mas (3471458)
Ho Mai (3471467)
Ha Tuyen (3471464)
James Campbell (81613)
Nguyen Nhung (3471452)
Pham Van Minh (211349)
Jaap Wagenaar (308430)
Nguyen Mai (3471446)
Thai Hieu (3471443)
Constance Schultsz (96026)
Ngo Hoa (3471455)

September 2016

Patterns of antimicrobial resistance in EAEC and STEC isolated from humans in southern Vietnam. (XLS...

Additional file 2: Table S2. of Probiotic (Enterococcus faecium) induced responses of the hepatic proteome improves metabolic efficiency of broiler chickens (Gallus gallus)

Aijuan Zheng (219579)
Jianjie Luo (3469967)
Kun Meng (141278)
Jianke Li (219587)
Wayne Bryden (3469970)
Wenhuan Chang (3163065)
Shu Zhang (22238)
L. Wang (2327974)
Guohua Liu (506590)
Bin Yao (4375)

February 2016

The primer sequences used for qPCR analysis of the differentially expressed proteins of the liver of...

Edin Hamzić (3404822)
Rikke Kjærup (3404825)
Núria Mach (522344)
Guilietta Minozzi (3404819)
Francesco Strozzi (179781)
Valentina Gualdi (3404828)
John Williams (32544)
Jun Chen (4238)
Eva Wattrang (3404816)
Bart Buitenhuis (3404813)
Helle Juul-Madsen (3404834)
Tina Dalgaard (3404831)

January 2016

Summary of mapping statistics. Mapping statistics were obtained from TopHat2 and includes the number...

Additional file 14: of Transcriptome profile in bursa of Fabricius reveals potential mode for stress-influenced immune function in chicken stress model

Yanhua Zhang (356457)
Yanting Zhou (4039313)
Guirong Sun (3571250)
Kui Li (48173)
Zhuanjian Li (108072)
Aru Su (6085199)
Xiaojun Liu (58952)
Guoxi Li (63063)
Ruirui Jiang (5090348)
Ruili Han (4408216)
Yadong Tian (3580121)
Xiangtao Kang (3580112)
Fengbin Yan (6085202)

December 2018

Table S10. List of the genes and primers used for qRT-PCR validation. (XLSX 12 kb

Additional file 1: of Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development

Dirkjan Schokker (579932)
Alfons Jansman (3849133)
Gosse Veninga (3849130)
Naomi de Bruin (3849136)
Stephanie Vastenhouw (3849139)
Freddy de Bree (3849127)
Alex Bossers (64605)
Johanna Rebel (299313)
Mari Smits (3122115)

March 2017

Full analysis of differential expressed genes. The Additional File (presented as.xlsx) contains mult...

Additional file 1: of Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes

Wenguang Xiong (4851646)
Yulin Wang (213752)
Yongxue Sun (4851643)
Liping Ma (502627)
Qinglin Zeng (4851649)
Xiaotao Jiang (191589)
Andong Li (4851652)
Zhenling Zeng (3404546)
Tong Zhang (103827)

February 2018

Figure S1. Animal groups and sampling time points. Figure S2. ARG types in chicken fecal metagenomes...

Additional file 1: Table S1. of Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

Abstract

Extracted data

Additional file 1: Table S1. of Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

Abstract

Extracted data

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