Additional file 1: Figure S1. of Using mixtures of biological samples as process controls for RNA-sequencing experiments

Bland-Altman log-ratio(M) - log average (A) plots comparing gene expression in BLM-1 to BLM-2, which were mixed with a designed ratio of 1:1 brain RNA, 2:1 muscle RNA and 1:2 liver RNA. Points representing gene expression values for genes expressed at 5-fold greater levels in a specific tissue are colored based on the tissue in which they are selectively expressed. Non-tissue selective RNA are omitted for clarity. Library size normalization scales all libraries to a common total number of counts, while upper quartile normalization scales to the 75th percentile of the counts for each library. None of these normalizations accurately reflects the designed ratio of transcripts between samples. (PNG 473 kb