<p>The α parameter represents the <i>a priori</i> level of discordance expected among loci, where a high α assumes a high level of discordance among the gene trees and a low α assumes a low level of discordance. 246 loci with at least two parsimony informative sites covering eight <i>Diapensia</i> samples were used in the BUCKy analyses. Sample IDs refer to <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0140175#pone.0140175.t001" target="_blank">Table 1</a>. The concordance factors (CFs) and their 95% confidence intervals are shown on the branches; those in bold did not overlap with any conflicting CF, and those in bold and with an asterisk had no conflicting splits.</p
<p>Distributions of genotype concordance rates from same- and different-sample comparisons are non-o...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
<p>Histograms showing the frequency of support (bootstrap or concordance factor) values in the (A) b...
When phylogenetic trees inferred from different genes are incongruent, several methods are available...
<p>Posterior mean concordance factors at major nodes are displayed above branches. Branches with con...
The primary concordance tree topology inferred using Bayesian concordance analysis (BUCKy) of the po...
<p>Pie charts indicate concordance factors (CFs) for each split in the tree relative to conflicting ...
Figure A3. Primary concordance tree. Species sampled for each clade are indicated below the clade na...
<p>Primary concordance (“BUCKy”) tree constructed using Bayesian Concordance Analysis of RAxML boots...
The primary concordance tree inferred using Bayesian concordance analysis (BUCKy) of the posterior d...
<p>Support values represent concordance factors, i.e. the proportion of gene trees in which clades a...
<p>A. Primary concordance tree estimated by BCA; values above branches indicate sample-wide clade co...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
Comparison of BUCKy concordance factors for a completely sampled MCMC analysis (last 90% of samples)...
Supp. Table 7: Concordance factors from BUCKy analysis for all putative clades with at least 10% gen...
<p>Distributions of genotype concordance rates from same- and different-sample comparisons are non-o...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
<p>Histograms showing the frequency of support (bootstrap or concordance factor) values in the (A) b...
When phylogenetic trees inferred from different genes are incongruent, several methods are available...
<p>Posterior mean concordance factors at major nodes are displayed above branches. Branches with con...
The primary concordance tree topology inferred using Bayesian concordance analysis (BUCKy) of the po...
<p>Pie charts indicate concordance factors (CFs) for each split in the tree relative to conflicting ...
Figure A3. Primary concordance tree. Species sampled for each clade are indicated below the clade na...
<p>Primary concordance (“BUCKy”) tree constructed using Bayesian Concordance Analysis of RAxML boots...
The primary concordance tree inferred using Bayesian concordance analysis (BUCKy) of the posterior d...
<p>Support values represent concordance factors, i.e. the proportion of gene trees in which clades a...
<p>A. Primary concordance tree estimated by BCA; values above branches indicate sample-wide clade co...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
Comparison of BUCKy concordance factors for a completely sampled MCMC analysis (last 90% of samples)...
Supp. Table 7: Concordance factors from BUCKy analysis for all putative clades with at least 10% gen...
<p>Distributions of genotype concordance rates from same- and different-sample comparisons are non-o...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
<p>Histograms showing the frequency of support (bootstrap or concordance factor) values in the (A) b...