Add to ORKGWhen phylogenetic trees inferred from different genes are incongruent, several methods are available to reconcile gene trees and extract the shared phylogenetic information from the sequence data. Bayesian Concordance Analysis, implemented in BUCKy, aims to extract the vertical signal and to infer clusters of genes that share the same tree topology. The new version of BUCKy includes a quartet-based estimate of the species tree with branch lengths in coalescent units
Abstract Background The use of transcriptomic and gen...
International audienceIn the last decade, we witnessed the ascent of reconciliations as an important...
International audience: Gene trees record the combination of gene-level events, such as duplication,...
Abstract.—With the increasing interest in recognizing the discordance between gene genealogies, vari...
<p>Primary concordance (“BUCKy”) tree constructed using Bayesian Concordance Analysis of RAxML boots...
Here I advocate the utility of Bayesian concordance analysis as a mechanism for exploring the magnit...
Multigene sequence data have great potential for elucidating important and interesting evolutionary ...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
Abstract.—The reconstruction of a central tendency “species tree ” from a large number of conflictin...
<p>The α parameter represents the <i>a priori</i> level of discordance expected among loci, where a ...
Abstract.—The reconstruction of a central tendency “species tree ” from a large number of conflictin...
<p>Posterior mean concordance factors at major nodes are displayed above branches. Branches with con...
The processes of gene duplication, loss, and lineage sorting can result in incongruence between the ...
Abstract Background Gene tree - species tree reconciliation problems infer the patterns and processe...
Abstract Background The use of transcriptomic and gen...
International audienceIn the last decade, we witnessed the ascent of reconciliations as an important...
International audience: Gene trees record the combination of gene-level events, such as duplication,...
Abstract.—With the increasing interest in recognizing the discordance between gene genealogies, vari...
<p>Primary concordance (“BUCKy”) tree constructed using Bayesian Concordance Analysis of RAxML boots...
Here I advocate the utility of Bayesian concordance analysis as a mechanism for exploring the magnit...
Multigene sequence data have great potential for elucidating important and interesting evolutionary ...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
Gene tree conflict is common and finding methods to analyze and alleviate the negative effects that ...
Abstract.—The reconstruction of a central tendency “species tree ” from a large number of conflictin...
<p>The α parameter represents the <i>a priori</i> level of discordance expected among loci, where a ...
Abstract.—The reconstruction of a central tendency “species tree ” from a large number of conflictin...
<p>Posterior mean concordance factors at major nodes are displayed above branches. Branches with con...
The processes of gene duplication, loss, and lineage sorting can result in incongruence between the ...
Abstract Background Gene tree - species tree reconciliation problems infer the patterns and processe...
Abstract Background The use of transcriptomic and gen...
International audienceIn the last decade, we witnessed the ascent of reconciliations as an important...
International audience: Gene trees record the combination of gene-level events, such as duplication,...