Focus networks of HMGCR and FoxA1/A2/A3 of the six patients. Differential expression of nodes at 12 h is highlighted. Data are shown for patients 62 (a), 65 (b), 67 (c), 79 (d), 80 (e) and 81 (f). Up regulated nodes are shown as upward triangles, colored in red. Down regulated nodes are displayed as downward arrows, colored green. The Fox transcription factors are shown in orange, as is the HMGCR. Protein-protein interactions have grey edges; edges of transcription factor gene interactions are colored red. (PDF 160 kb
Figure S8. Comparison of significantly enriched KEGG pathway annotations in each of our analyses. Up...
PPI network and module analysis in HLCs/PHHs. (A) Network of all upregulated DEGs. (B) Network of al...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...
Focus network of all atorvastatin targets and differentially expressed genes after EDISA 3D clusteri...
(a) Clustering of patients based on the FoxA1 neighbor focus network shown in Fig. 4, as well as th...
log2 fold change of six selected patients at time points 6 h, 12 h, 24 h, 48 h and 72 h. Data were t...
Background: Interpreting large-scale studies from microarrays or next-generation sequencing for furt...
Figure S1 KEGG analysis of metabolic networks. KEGG analysis identified the most enriched metabolic ...
Figure S5. all 154 genes that are found to be co-occurring with the MLPH-FOXA1 association, where th...
Figure S2 KEGG analysis of metabolic networks. KEGG analysis identified the most enriched metabolic ...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
Figure S1. Genomic map of FOXP2 and MDFIC region. A. Chromosome 7 ideogram representation. Red box s...
Figure S2. Integration of all signaling pathways. Gene products were visualized as blue ellipses. Th...
GO analysis from Fig. 3 D and H, with GO terms displayed. Developmental profiles of connectivity ge...
Figure S3. Integration of genes of signaling pathways. Genes in the network were indicated as blue e...
Figure S8. Comparison of significantly enriched KEGG pathway annotations in each of our analyses. Up...
PPI network and module analysis in HLCs/PHHs. (A) Network of all upregulated DEGs. (B) Network of al...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...
Focus network of all atorvastatin targets and differentially expressed genes after EDISA 3D clusteri...
(a) Clustering of patients based on the FoxA1 neighbor focus network shown in Fig. 4, as well as th...
log2 fold change of six selected patients at time points 6 h, 12 h, 24 h, 48 h and 72 h. Data were t...
Background: Interpreting large-scale studies from microarrays or next-generation sequencing for furt...
Figure S1 KEGG analysis of metabolic networks. KEGG analysis identified the most enriched metabolic ...
Figure S5. all 154 genes that are found to be co-occurring with the MLPH-FOXA1 association, where th...
Figure S2 KEGG analysis of metabolic networks. KEGG analysis identified the most enriched metabolic ...
Gene Ontology (GO) analysis of differentially expressed genes in the stepwise tumorigenesis system. ...
Figure S1. Genomic map of FOXP2 and MDFIC region. A. Chromosome 7 ideogram representation. Red box s...
Figure S2. Integration of all signaling pathways. Gene products were visualized as blue ellipses. Th...
GO analysis from Fig. 3 D and H, with GO terms displayed. Developmental profiles of connectivity ge...
Figure S3. Integration of genes of signaling pathways. Genes in the network were indicated as blue e...
Figure S8. Comparison of significantly enriched KEGG pathway annotations in each of our analyses. Up...
PPI network and module analysis in HLCs/PHHs. (A) Network of all upregulated DEGs. (B) Network of al...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...