Additional file 1: Table S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Additional file 1: Table S1. of Differential expression of alternatively spliced transcripts related to energy metabolism in colorectal cancer

Anastasiya Snezhkina (3436010)
George Krasnov (780701)
Andrew Zaretsky (3606458)
Alex Zhavoronkov (347712)
Kirill Nyushko (3606443)
Alexey Moskalev (514322)
Irina Karpova (3606446)
Anastasiya Afremova (3606455)
Anastasiya Lipatova (3606464)
Dmitriy Kochetkov (3606452)
Maria Fedorova (1493854)
Nadezhda Volchenko (3606476)
Asiya Sadritdinova (3436028)
Nataliya Melnikova (514328)
Dmitry Sidorov (3606467)
Anatoly Popov (3606473)
Dmitry Kalinin (3606461)
Andrey Kaprin (3606470)
Boris Alekseev (3606449)
Alexey Dmitriev (514331)
Anna Kudryavtseva (514334)

December 2016

Differential expression profiles of genes and transcripts in colon adenocarcinomas compared to match...

Additional file 3: of Genes CEP55, FOXD3, FOXF2, GNAO1, GRIA4, and KCNA5 as potential diagnostic biomarkers in colorectal cancer

Nina Hauptman (842541)
Daša Jevšinek Skok (6590996)
Elena Spasovska (6590999)
Emanuela Boštjančič (6591002)
Damjan Glavač (842542)

April 2019

Table S3. Aberrantly methylated and differentially expressed genes. A list of probes aberrantly meth...

Additional file 4: of Transgelin gene is frequently downregulated by promoter DNA hypermethylation in breast cancer

Nilufer Sayar (3411947)
Gurbet Karahan (3411950)
Ozlen Konu (412799)
Betul Bozkurt (246991)
Onder Bozdogan (3411944)
Isik Yulug (3411941)

September 2015

Tables not included in the main manuscript have been listed. Table S1. Number of probe sets affected...

Additional file 3: Figure S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Gene expression of the selected marker set in normal (n = 49), adenoma (n = 49), and tumour (n = 49)...

Additional file 1: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Table S1A. Top50 hypermethylated DMRs in CRC versus NAT comparison. Table S1B. Top50 hypomethylated ...

Additional file 5: Figure S2. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...

Additional file 2: of Genome-wide methylation profiling identified novel differentially hypermethylated biomarker MPPED2 in colorectal cancer

Simeng Gu (6438257)
Shujuan Lin (6169328)
Ding Ye (405963)
Sangni Qian (6438266)
Danjie Jiang (395701)
Xiaocong Zhang (6438269)
Qilong Li (5477081)
Jinhua Yang (2019088)
Xiaojiang Ying (538813)
Zhenjun Li (275953)
Mengling Tang (644955)
Jianbing Wang (5118731)
Mingjuan Jin (186609)
Kun Chen (131048)

March 2019

Table S2. A list of differentially hypermethylated and expressed genes identified by both EPIC array...

Additional file 1: of Integrated analyses of multi-omics reveal global patterns of methylation and hydroxymethylation and screen the tumor suppressive roles of HADHB in colorectal cancer

Yimin Zhu (101874)
Hanlin Lu (2925378)
Dandan Zhang (228849)
Meiyan Li (441468)
Xiaohui Sun (520181)
Ledong Wan (1947580)
Dan Yu (214174)
Yiping Tian (4908259)
Hongchuan Jin (194460)
Aifen Lin (3504350)
Fei Gao (29262)
Maode Lai (15338)

March 2018

Table S1. The basic characteristics of six patients of colorectal cancer. Table S2. Summary of MeDIP...

Additional file 2: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Figure S1. Box plots of significant DMRs in TP53 pathway gene promoters between CRC and NAT samples....

Additional file 1: Table S1. of TFF1 hypermethylation and decreased expression in esophageal squamous cell carcinoma and histologically normal tumor surrounding esophageal cells

Isabela Gonzaga (4709059)
Sheila Soares Lima (4681483)
Marina Nicolau (4709065)
Pedro Nicolau-Neto (4681480)
Nathalia da Costa (4709056)
Tatiana de Almeida SimĂŁo (4709062)
Hector Hernandez-Vargas (251855)
Zdenko Herceg (251863)
Luis Ribeiro Pinto (4709068)

December 2017

Association between clinicopathological data and TFF1 methylation and expression in healthy esophagu...

Additional file 1: Table S1. of Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer

Tyler McInnes (3874525)
Donghui Zou (3874513)
Dasari Rao (3874516)
Francesca Munro (3874534)
Vicky Phillips (3874528)
John McCall (3874522)
Michael Black (246211)
Anthony Reeve (3874519)
Parry Guilford (3874531)

March 2017

258 genes hypermethylated in more than 90% of all CIMP-H tumours. Two-hundred fifty eight CpG island...

Additional file 1: of The associations of DNA methylation alterations in oxidative stress-related genes with cancer incidence and mortality outcomes: a population-based cohort study

Xīn Gào (6262232)
Yan Zhang (8098)
Barbara Burwinkel (146479)
Yang Xuan (419293)
Bernd Holleczek (287845)
Hermann Brenner (63649)
Ben Schöttker (300688)

January 2019

Table S1. 519 genes coding for proteins involved in pathways from oxidative stress to cancer. Table ...

Additional file 1 of Circulating cell-free DNA methylation patterns as non-invasive biomarkers to monitor colorectal cancer treatment efficacy without referencing primary site mutation profiles

Kazuya Yasui (10874552)
Toshiaki Toshima (10874555)
Ryo Inada (13980987)
Yuzo Umeda (762721)
Shuya Yano (157763)
Hiroaki Tanioka (7491530)
Akihiro Nyuya (4764216)
Toshiyoshi Fujiwara (157767)
Takeshi Yamada (160800)
Yoshio Naomoto (360090)
Ajay Goel (130080)
Takeshi Nagasaka (8474)

January 2024

Additional file 1: Fig. S1. Study Flow Charts. Fig. S2. Representative Hi-SA results for ccfDNA. Fig...

Additional file 4: of Genome-wide methylation profiling identified novel differentially hypermethylated biomarker MPPED2 in colorectal cancer

Simeng Gu (6438257)
Shujuan Lin (6169328)
Ding Ye (405963)
Sangni Qian (6438266)
Danjie Jiang (395701)
Xiaocong Zhang (6438269)
Qilong Li (5477081)
Jinhua Yang (2019088)
Xiaojiang Ying (538813)
Zhenjun Li (275953)
Mengling Tang (644955)
Jianbing Wang (5118731)
Mingjuan Jin (186609)
Kun Chen (131048)

March 2019

Table S3. Results of ROC curve analysis between CRC tissues and adjacent normal tissues. (DOCX 12 kb

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Additional file 1: Table S1. of Differential expression of alternatively spliced transcripts related to energy metabolism in colorectal cancer

Anastasiya Snezhkina (3436010)
George Krasnov (780701)
Andrew Zaretsky (3606458)
Alex Zhavoronkov (347712)
Kirill Nyushko (3606443)
Alexey Moskalev (514322)
Irina Karpova (3606446)
Anastasiya Afremova (3606455)
Anastasiya Lipatova (3606464)
Dmitriy Kochetkov (3606452)
Maria Fedorova (1493854)
Nadezhda Volchenko (3606476)
Asiya Sadritdinova (3436028)
Nataliya Melnikova (514328)
Dmitry Sidorov (3606467)
Anatoly Popov (3606473)
Dmitry Kalinin (3606461)
Andrey Kaprin (3606470)
Boris Alekseev (3606449)
Alexey Dmitriev (514331)
Anna Kudryavtseva (514334)

December 2016

Differential expression profiles of genes and transcripts in colon adenocarcinomas compared to match...

Additional file 3: of Genes CEP55, FOXD3, FOXF2, GNAO1, GRIA4, and KCNA5 as potential diagnostic biomarkers in colorectal cancer

Nina Hauptman (842541)
Daša Jevšinek Skok (6590996)
Elena Spasovska (6590999)
Emanuela Boštjančič (6591002)
Damjan Glavač (842542)

April 2019

Table S3. Aberrantly methylated and differentially expressed genes. A list of probes aberrantly meth...

Additional file 4: of Transgelin gene is frequently downregulated by promoter DNA hypermethylation in breast cancer

Nilufer Sayar (3411947)
Gurbet Karahan (3411950)
Ozlen Konu (412799)
Betul Bozkurt (246991)
Onder Bozdogan (3411944)
Isik Yulug (3411941)

September 2015

Tables not included in the main manuscript have been listed. Table S1. Number of probe sets affected...

Additional file 3: Figure S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Gene expression of the selected marker set in normal (n = 49), adenoma (n = 49), and tumour (n = 49)...

Additional file 1: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Table S1A. Top50 hypermethylated DMRs in CRC versus NAT comparison. Table S1B. Top50 hypomethylated ...

Additional file 5: Figure S2. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...

Additional file 2: of Genome-wide methylation profiling identified novel differentially hypermethylated biomarker MPPED2 in colorectal cancer

Simeng Gu (6438257)
Shujuan Lin (6169328)
Ding Ye (405963)
Sangni Qian (6438266)
Danjie Jiang (395701)
Xiaocong Zhang (6438269)
Qilong Li (5477081)
Jinhua Yang (2019088)
Xiaojiang Ying (538813)
Zhenjun Li (275953)
Mengling Tang (644955)
Jianbing Wang (5118731)
Mingjuan Jin (186609)
Kun Chen (131048)

March 2019

Table S2. A list of differentially hypermethylated and expressed genes identified by both EPIC array...

Additional file 1: of Integrated analyses of multi-omics reveal global patterns of methylation and hydroxymethylation and screen the tumor suppressive roles of HADHB in colorectal cancer

Yimin Zhu (101874)
Hanlin Lu (2925378)
Dandan Zhang (228849)
Meiyan Li (441468)
Xiaohui Sun (520181)
Ledong Wan (1947580)
Dan Yu (214174)
Yiping Tian (4908259)
Hongchuan Jin (194460)
Aifen Lin (3504350)
Fei Gao (29262)
Maode Lai (15338)

March 2018

Table S1. The basic characteristics of six patients of colorectal cancer. Table S2. Summary of MeDIP...

Additional file 2: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Figure S1. Box plots of significant DMRs in TP53 pathway gene promoters between CRC and NAT samples....

Additional file 1: Table S1. of TFF1 hypermethylation and decreased expression in esophageal squamous cell carcinoma and histologically normal tumor surrounding esophageal cells

Isabela Gonzaga (4709059)
Sheila Soares Lima (4681483)
Marina Nicolau (4709065)
Pedro Nicolau-Neto (4681480)
Nathalia da Costa (4709056)
Tatiana de Almeida SimĂŁo (4709062)
Hector Hernandez-Vargas (251855)
Zdenko Herceg (251863)
Luis Ribeiro Pinto (4709068)

December 2017

Association between clinicopathological data and TFF1 methylation and expression in healthy esophagu...

Additional file 1: Table S1. of Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer

Tyler McInnes (3874525)
Donghui Zou (3874513)
Dasari Rao (3874516)
Francesca Munro (3874534)
Vicky Phillips (3874528)
John McCall (3874522)
Michael Black (246211)
Anthony Reeve (3874519)
Parry Guilford (3874531)

March 2017

258 genes hypermethylated in more than 90% of all CIMP-H tumours. Two-hundred fifty eight CpG island...

Additional file 1: of The associations of DNA methylation alterations in oxidative stress-related genes with cancer incidence and mortality outcomes: a population-based cohort study

Xīn Gào (6262232)
Yan Zhang (8098)
Barbara Burwinkel (146479)
Yang Xuan (419293)
Bernd Holleczek (287845)
Hermann Brenner (63649)
Ben Schöttker (300688)

January 2019

Table S1. 519 genes coding for proteins involved in pathways from oxidative stress to cancer. Table ...

Additional file 1 of Circulating cell-free DNA methylation patterns as non-invasive biomarkers to monitor colorectal cancer treatment efficacy without referencing primary site mutation profiles

Kazuya Yasui (10874552)
Toshiaki Toshima (10874555)
Ryo Inada (13980987)
Yuzo Umeda (762721)
Shuya Yano (157763)
Hiroaki Tanioka (7491530)
Akihiro Nyuya (4764216)
Toshiyoshi Fujiwara (157767)
Takeshi Yamada (160800)
Yoshio Naomoto (360090)
Ajay Goel (130080)
Takeshi Nagasaka (8474)

January 2024

Additional file 1: Fig. S1. Study Flow Charts. Fig. S2. Representative Hi-SA results for ccfDNA. Fig...

Additional file 4: of Genome-wide methylation profiling identified novel differentially hypermethylated biomarker MPPED2 in colorectal cancer

Simeng Gu (6438257)
Shujuan Lin (6169328)
Ding Ye (405963)
Sangni Qian (6438266)
Danjie Jiang (395701)
Xiaocong Zhang (6438269)
Qilong Li (5477081)
Jinhua Yang (2019088)
Xiaojiang Ying (538813)
Zhenjun Li (275953)
Mengling Tang (644955)
Jianbing Wang (5118731)
Mingjuan Jin (186609)
Kun Chen (131048)

March 2019

Table S3. Results of ROC curve analysis between CRC tissues and adjacent normal tissues. (DOCX 12 kb

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Additional file 1: Table S1. of Differential expression of alternatively spliced transcripts related to energy metabolism in colorectal cancer

Anastasiya Snezhkina (3436010)
George Krasnov (780701)
Andrew Zaretsky (3606458)
Alex Zhavoronkov (347712)
Kirill Nyushko (3606443)
Alexey Moskalev (514322)
Irina Karpova (3606446)
Anastasiya Afremova (3606455)
Anastasiya Lipatova (3606464)
Dmitriy Kochetkov (3606452)
Maria Fedorova (1493854)
Nadezhda Volchenko (3606476)
Asiya Sadritdinova (3436028)
Nataliya Melnikova (514328)
Dmitry Sidorov (3606467)
Anatoly Popov (3606473)
Dmitry Kalinin (3606461)
Andrey Kaprin (3606470)
Boris Alekseev (3606449)
Alexey Dmitriev (514331)
Anna Kudryavtseva (514334)

December 2016

Differential expression profiles of genes and transcripts in colon adenocarcinomas compared to match...

Additional file 3: of Genes CEP55, FOXD3, FOXF2, GNAO1, GRIA4, and KCNA5 as potential diagnostic biomarkers in colorectal cancer

Nina Hauptman (842541)
Daša Jevšinek Skok (6590996)
Elena Spasovska (6590999)
Emanuela Boštjančič (6591002)
Damjan Glavač (842542)

April 2019

Table S3. Aberrantly methylated and differentially expressed genes. A list of probes aberrantly meth...

Additional file 4: of Transgelin gene is frequently downregulated by promoter DNA hypermethylation in breast cancer

Nilufer Sayar (3411947)
Gurbet Karahan (3411950)
Ozlen Konu (412799)
Betul Bozkurt (246991)
Onder Bozdogan (3411944)
Isik Yulug (3411941)

September 2015

Tables not included in the main manuscript have been listed. Table S1. Number of probe sets affected...

Additional file 1: Table S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Abstract

Extracted data

Additional file 1: Table S1. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Abstract

Extracted data

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