<p>Dark shading indicates HGs for which myRAST identified a function, lighter shading were identified only as “hypothetical proteins”. Strain-specific genes are indicated by the leftmost bar (a), and character HGs (b) are between strain-specific genes and HGs of the extended core (c). The strict core genome is made up of HGs present in all 37 strains (d). Although relatively few genes per genome (<math><mrow><mi>x</mi><mo>¯</mo> <mo>=</mo> <mn>153</mn></mrow></math>) are strain-specific, the cumulative total across the pangenome is high.</p
<p>The sequence of each group following resequencing was compared with the reference genome (GRCh37/...
<p>Each strain is represented by an oval that is colored according to sub-clade (as in <a href="http...
(A) Frequent synteny blocks identified between pairs of contigs in the P. guiyangense genome assembl...
<p>Panels (A) and (B) are based on all protein-coding genes, panels (C) and (D) are based on the put...
is genetically heterogeneous and comprises distinct clonal lineages that may have different virulen...
<p>The discovery order of genomes was permuted 100 times with the total number of genes discovered s...
BackgroundWith the exponential growth of publicly available genome sequences, pangenome analyses hav...
<p>(A) From the concatenated alignment of the universal core OGs. (B) From the gene content (presenc...
<p>The maximum likelihood phylogeny was inferred from the concatenated protein alignment of 2,374 si...
(A) Biological process. (B) Molecular function. (C) Cellular component. (D) Protein Class. *EHI_0014...
<p>The fraction of HPKs with identical upstream domains to either their inferred HGT partners (red b...
<p>The functional categorization of each homologous gene clusters was classified according to the CO...
<p>Graph (A) shows a summary of the expected distribution of genomic features of the whole human gen...
The enormous intraspecific variability found in prokaryotic genomes calls for a pangenomic approach ...
<p>The tree is midpoint rooted and all branches with bootstrap support less than 80% are collapsed. ...
<p>The sequence of each group following resequencing was compared with the reference genome (GRCh37/...
<p>Each strain is represented by an oval that is colored according to sub-clade (as in <a href="http...
(A) Frequent synteny blocks identified between pairs of contigs in the P. guiyangense genome assembl...
<p>Panels (A) and (B) are based on all protein-coding genes, panels (C) and (D) are based on the put...
is genetically heterogeneous and comprises distinct clonal lineages that may have different virulen...
<p>The discovery order of genomes was permuted 100 times with the total number of genes discovered s...
BackgroundWith the exponential growth of publicly available genome sequences, pangenome analyses hav...
<p>(A) From the concatenated alignment of the universal core OGs. (B) From the gene content (presenc...
<p>The maximum likelihood phylogeny was inferred from the concatenated protein alignment of 2,374 si...
(A) Biological process. (B) Molecular function. (C) Cellular component. (D) Protein Class. *EHI_0014...
<p>The fraction of HPKs with identical upstream domains to either their inferred HGT partners (red b...
<p>The functional categorization of each homologous gene clusters was classified according to the CO...
<p>Graph (A) shows a summary of the expected distribution of genomic features of the whole human gen...
The enormous intraspecific variability found in prokaryotic genomes calls for a pangenomic approach ...
<p>The tree is midpoint rooted and all branches with bootstrap support less than 80% are collapsed. ...
<p>The sequence of each group following resequencing was compared with the reference genome (GRCh37/...
<p>Each strain is represented by an oval that is colored according to sub-clade (as in <a href="http...
(A) Frequent synteny blocks identified between pairs of contigs in the P. guiyangense genome assembl...