Additional file 4: Table S2. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

Publication date

October 2015

DOI

10.6084/m9.figshare.c.3631667_d6.v1

Abstract

Statistical analysis of overall survival with regard to the detection of CTC and mutant KRAS cfDNA in plasma. N.B: The Cox and Weibull regression are corrected by age and sex. (DOC 30 kb

Extracted data

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Data Protection

Additional file 4: Table S2. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

Open link

Publication date

October 2015

DOI

10.6084/m9.figshare.c.3631667_d6.v1

Abstract

Statistical analysis of overall survival with regard to the detection of CTC and mutant KRAS cfDNA in plasma. N.B: The Cox and Weibull regression are corrected by age and sex. (DOC 30 kb

Extracted data

Maryam Eissa (6561491)
Lane Lerner (5435501)
Eihab Abdelfatah (3955109)
Nakul Shankar (6561503)
Joseph Canner (3467084)
Nesrin Hasan (6561509)
Vesal Yaghoobi (6561512)
Barry Huang (6561515)
Zachary Kerner (3955112)
Felipe Takaesu (6561521)
Christopher Wolfgang (4236652)
Ruby Kwak (6561524)
Michael Ruiz (443083)
Matthew Tam (6561527)
Thomas Pisanic (6561530)
Christine Iacobuzio-Donahue (117065)
Ralph Hruban (6561533)
Jin He (341320)
Tza-Huei Wang (61741)
Laura Wood (3564788)
Anup Sharma (253963)
Nita Ahuja (49818)

April 2019

Table S1. Surgical information. Table S2. Oligonucleotides probe sequences. Table S3. Oligonucleotid...

DNA copy number status is a powerful predictor of poor survival in endocrine pancreatic tumor patients.

Jonkers, Y.M.H.
Claessen, S.M.
Perren, A.
Schmitt, A.M.
Hofland, L.J.
Herder, W. de
Krijger, R.R. de
Verhofstad, A.A.J.
Hermus, A.R.M.M.
Kummer, J.A.
Skogseid, B
Volante, M
Voogd, A.C.
Ramaekers, F.C.S.
Speel, E.J.

January 2007

Contains fulltext : 51988.pdf (publisher's version ) (Open Access)The clinical beh...

Additional file 1: of Cytokeratin 20 positive circulating tumor cells are a marker for response after neoadjuvant chemoradiation but not for prognosis in patients with rectal cancer

Sebastian Hinz (458433)
Christian RĂśder (3532166)
JĂźrgen Tepel (3532163)
Alexander Hendricks (3532139)
Clemens Schafmayer (180631)
Thomas Becker (1225215)
Holger Kalthoff (243490)

December 2015

The figure shows a sample results of CK20 RT-PCR from 16 patients, including two positive controls (...

Additional file 5: Figure S3. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Estimated Survival Curves adjusted by sex and age using Cox regression for CTC and KRAS Mutant model...

Additional file 2: Figure S1. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Specificity of KRAS mutation assays (G12D, G12R and G12V) determined by ddPCR of KRAS mutant and WT ...

Additional file 6: Figure S4. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Graphical test of the Weibull assumption. Plot of log(-log(Survival)) vs log(time). When the result ...

Additional file 2 of Potential value of ctDNA monitoring in metastatic HR + /HER2 − breast cancer: longitudinal ctDNA analysis in the phase Ib MONALEESASIA trial

Joanne Chiu (10818178)
Fei Su (106529)
Mukta Joshi (16829977)
Norikazu Masuda (3511787)
Takashi Ishikawa (206896)
Tomoyuki Aruga (5122379)
Juan Pablo Zarate (5991164)
Naveen Babbar (9244692)
O. Alejandro Balbin (16829980)
Yoon-Sim Yap (12253401)

August 2023

Additional file 2: Supplementary Table 1. cfDNA Samples Included in 23This Analysisa. Abbreviations:...

Additional file 5: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma

Stine Henriksen (3398396)
Poul Madsen (3398393)
Anders Larsen (3398384)
Martin Johansen (3398387)
AsbjĂ¸rn Drewes (3398414)
Inge Pedersen (3398390)
Henrik Krarup (213503)
Ole Thorlacius-Ussing (3398381)

November 2016

Correlation between level of cell-free DNA (ng/ml) and total number of hypermethylated genes. (DOCX ...

Additional file 1: of Comparison of quantification algorithms for circulating cell-free DNA methylation biomarkers in blood plasma from cancer patients

Luka de Vos (4635880)
Heidrun Gevensleben (3308331)
Andreas Schröck (395005)
Alina Franzen (395009)
Glen Kristiansen (76479)
Friedrich Bootz (395015)
Dimo Dietrich (22859)

December 2017

Baseline characteristics and clinicopathological variables. Table with characteristics of HNSCC and ...

Additional file 2: Figure S2. of Prediction of cancer progression in a group of 73 gastric cancer patients by circulating cell-free DNA

Wang-Yang Pu (3492590)
Rong Zhang (44942)
Li Xiao (307908)
Yong-You Wu (3492572)
Wei Gong (112494)
Xiao-Dong Lv (3492587)
Feng-Yun Zhong (3492575)
Zhi-Xiang Zhuang (3492578)
Xu-Ming Bai (3492581)
Kai Li (205203)
Chun-Gen Xing (3492584)

December 2016

Alu115-qPCR values in plasma from healthy controls and patients with gastric cancer. Horizontal line...

Additional file 1: of Loss of the transcriptional repressor TGIF1 results in enhanced Kras-driven development of pancreatic cancer

Ching-Chieh Weng (6716045)
Mei-Jen Hsieh (6716048)
Chia-Chen Wu (392526)
Yu-Chun Lin (36446)
Yan-Shen Shan (424776)
Wen-Chun Hung (303185)
Li-Tzong Chen (388257)
Kuang-Hung Cheng (771984)

May 2019

Table S1. List of the primary antibodies used in this study, and information on working dilutions of...

Additional file 1: Table S1. of Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages

Meng Yang (162251)
Umit Topaloglu (626154)
W. Petty (4004927)
Matthew Pagni (4004912)
Kristie Foley (4004936)
Stefan Grant (4004939)
Mac Robinson (4004903)
Rhonda Bitting (4004951)
Alexandra Thomas (4004906)
Angela Alistar (3216504)
Rodwige Desnoyers (4004924)
Michael Goodman (37506)
Carol Albright (4004930)
Mercedes Porosnicu (4004921)
Mihaela Vatca (4004933)
Shadi Qasem (4004945)
Barry DeYoung (4004918)
Ville Kytola (4004942)
Matti Nykter (21557)
Kexin Chen (181385)
Edward Levine (4004909)
Edgar Staren (4004915)
Ralph DâAgostino (4004897)
Robin Petro (4004948)
William Blackstock (289137)
Bayard Powell (4004954)
Edward Abraham (322531)
Boris Pasche (4004900)
Wei Zhang (405)

May 2017

Clinical and treatment characteristics of the 18 cases with no ctDNA alterations detected. Table S2....

Additional file 1: of Pancreatic cancer as a sentinel for hereditary cancer predisposition

Erin Young (5454515)
Bryony Thompson (5454527)
Deborah Neklason (5454509)
Matthew Firpo (5454512)
Theresa Werner (5454542)
Russell Bell (4539349)
Justin Berger (272454)
Alison Fraser (5454530)
Amanda Gammon (5454539)
Cathryn Koptiuch (5454518)
Wendy Kohlmann (5454536)
Leigh Neumayer (5454533)
David Goldgar (29053)
Sean Mulvihill (5454524)
Lisa Cannon-Albright (523061)
Sean Tavtigian (5454521)

June 2018

Table S1. contains the list of the genes used in the study, as well as indicators for which pathway ...

Supplementary Tables S1 and S2 from The Origin of Highly Elevated Cell-Free DNA in Healthy Individuals and Patients with Pancreatic, Colorectal, Lung, or Ovarian Cancer

Austin K. Mattox (17098866)
Christopher Douville (17098869)
Yuxuan Wang (17098872)
Maria Popoli (17098875)
Janine Ptak (17098878)
Natalie Silliman (17098881)
Lisa Dobbyn (17098884)
Joy Schaefer (17098887)
Steve Lu (17098890)
Alexander H. Pearlman (17098893)
Joshua D. Cohen (17098896)
Jeanne Tie (15021428)
Peter Gibbs (15054841)
Kamel Lahouel (17098899)
Chetan Bettegowda (15997882)
Ralph H. Hruban (15018831)
Cristian Tomasetti (17098902)
Peiyong Jiang (17098905)
K.C. Allen Chan (15111307)
Yuk Ming Dennis Lo (17098908)
Nickolas Papadopoulos (17098911)
Kenneth W. Kinzler (17098914)
Bert Vogelstein (17098917)

October 2023

Supplementary Table 1. Demographic, clinical, and plasma cfDNA data for the patients included in the...

Additional file 1: of Promoter methylation of ADAMTS1 and BNC1 as potential biomarkers for early detection of pancreatic cancer in blood

Maryam Eissa (6561491)
Lane Lerner (5435501)
Eihab Abdelfatah (3955109)
Nakul Shankar (6561503)
Joseph Canner (3467084)
Nesrin Hasan (6561509)
Vesal Yaghoobi (6561512)
Barry Huang (6561515)
Zachary Kerner (3955112)
Felipe Takaesu (6561521)
Christopher Wolfgang (4236652)
Ruby Kwak (6561524)
Michael Ruiz (443083)
Matthew Tam (6561527)
Thomas Pisanic (6561530)
Christine Iacobuzio-Donahue (117065)
Ralph Hruban (6561533)
Jin He (341320)
Tza-Huei Wang (61741)
Laura Wood (3564788)
Anup Sharma (253963)
Nita Ahuja (49818)

April 2019

Table S1. Surgical information. Table S2. Oligonucleotides probe sequences. Table S3. Oligonucleotid...

DNA copy number status is a powerful predictor of poor survival in endocrine pancreatic tumor patients.

Jonkers, Y.M.H.
Claessen, S.M.
Perren, A.
Schmitt, A.M.
Hofland, L.J.
Herder, W. de
Krijger, R.R. de
Verhofstad, A.A.J.
Hermus, A.R.M.M.
Kummer, J.A.
Skogseid, B
Volante, M
Voogd, A.C.
Ramaekers, F.C.S.
Speel, E.J.

January 2007

Contains fulltext : 51988.pdf (publisher's version ) (Open Access)The clinical beh...

Additional file 1: of Cytokeratin 20 positive circulating tumor cells are a marker for response after neoadjuvant chemoradiation but not for prognosis in patients with rectal cancer

Sebastian Hinz (458433)
Christian RĂśder (3532166)
JĂźrgen Tepel (3532163)
Alexander Hendricks (3532139)
Clemens Schafmayer (180631)
Thomas Becker (1225215)
Holger Kalthoff (243490)

December 2015

The figure shows a sample results of CK20 RT-PCR from 16 patients, including two positive controls (...

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Estimated Survival Curves adjusted by sex and age using Cox regression for CTC and KRAS Mutant model...

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Specificity of KRAS mutation assays (G12D, G12R and G12V) determined by ddPCR of KRAS mutant and WT ...

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Graphical test of the Weibull assumption. Plot of log(-log(Survival)) vs log(time). When the result ...

Additional file 2 of Potential value of ctDNA monitoring in metastatic HR + /HER2 − breast cancer: longitudinal ctDNA analysis in the phase Ib MONALEESASIA trial

Joanne Chiu (10818178)
Fei Su (106529)
Mukta Joshi (16829977)
Norikazu Masuda (3511787)
Takashi Ishikawa (206896)
Tomoyuki Aruga (5122379)
Juan Pablo Zarate (5991164)
Naveen Babbar (9244692)
O. Alejandro Balbin (16829980)
Yoon-Sim Yap (12253401)

August 2023

Additional file 2: Supplementary Table 1. cfDNA Samples Included in 23This Analysisa. Abbreviations:...

Additional file 5: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma

Stine Henriksen (3398396)
Poul Madsen (3398393)
Anders Larsen (3398384)
Martin Johansen (3398387)
AsbjĂ¸rn Drewes (3398414)
Inge Pedersen (3398390)
Henrik Krarup (213503)
Ole Thorlacius-Ussing (3398381)

November 2016

Correlation between level of cell-free DNA (ng/ml) and total number of hypermethylated genes. (DOCX ...

Additional file 1: of Comparison of quantification algorithms for circulating cell-free DNA methylation biomarkers in blood plasma from cancer patients

Luka de Vos (4635880)
Heidrun Gevensleben (3308331)
Andreas Schröck (395005)
Alina Franzen (395009)
Glen Kristiansen (76479)
Friedrich Bootz (395015)
Dimo Dietrich (22859)

December 2017

Baseline characteristics and clinicopathological variables. Table with characteristics of HNSCC and ...

Additional file 2: Figure S2. of Prediction of cancer progression in a group of 73 gastric cancer patients by circulating cell-free DNA

Wang-Yang Pu (3492590)
Rong Zhang (44942)
Li Xiao (307908)
Yong-You Wu (3492572)
Wei Gong (112494)
Xiao-Dong Lv (3492587)
Feng-Yun Zhong (3492575)
Zhi-Xiang Zhuang (3492578)
Xu-Ming Bai (3492581)
Kai Li (205203)
Chun-Gen Xing (3492584)

December 2016

Alu115-qPCR values in plasma from healthy controls and patients with gastric cancer. Horizontal line...

Additional file 1: of Loss of the transcriptional repressor TGIF1 results in enhanced Kras-driven development of pancreatic cancer

Ching-Chieh Weng (6716045)
Mei-Jen Hsieh (6716048)
Chia-Chen Wu (392526)
Yu-Chun Lin (36446)
Yan-Shen Shan (424776)
Wen-Chun Hung (303185)
Li-Tzong Chen (388257)
Kuang-Hung Cheng (771984)

May 2019

Table S1. List of the primary antibodies used in this study, and information on working dilutions of...

Additional file 1: Table S1. of Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages

Meng Yang (162251)
Umit Topaloglu (626154)
W. Petty (4004927)
Matthew Pagni (4004912)
Kristie Foley (4004936)
Stefan Grant (4004939)
Mac Robinson (4004903)
Rhonda Bitting (4004951)
Alexandra Thomas (4004906)
Angela Alistar (3216504)
Rodwige Desnoyers (4004924)
Michael Goodman (37506)
Carol Albright (4004930)
Mercedes Porosnicu (4004921)
Mihaela Vatca (4004933)
Shadi Qasem (4004945)
Barry DeYoung (4004918)
Ville Kytola (4004942)
Matti Nykter (21557)
Kexin Chen (181385)
Edward Levine (4004909)
Edgar Staren (4004915)
Ralph DâAgostino (4004897)
Robin Petro (4004948)
William Blackstock (289137)
Bayard Powell (4004954)
Edward Abraham (322531)
Boris Pasche (4004900)
Wei Zhang (405)

May 2017

Clinical and treatment characteristics of the 18 cases with no ctDNA alterations detected. Table S2....

Additional file 1: of Pancreatic cancer as a sentinel for hereditary cancer predisposition

Erin Young (5454515)
Bryony Thompson (5454527)
Deborah Neklason (5454509)
Matthew Firpo (5454512)
Theresa Werner (5454542)
Russell Bell (4539349)
Justin Berger (272454)
Alison Fraser (5454530)
Amanda Gammon (5454539)
Cathryn Koptiuch (5454518)
Wendy Kohlmann (5454536)
Leigh Neumayer (5454533)
David Goldgar (29053)
Sean Mulvihill (5454524)
Lisa Cannon-Albright (523061)
Sean Tavtigian (5454521)

June 2018

Table S1. contains the list of the genes used in the study, as well as indicators for which pathway ...

Supplementary Tables S1 and S2 from The Origin of Highly Elevated Cell-Free DNA in Healthy Individuals and Patients with Pancreatic, Colorectal, Lung, or Ovarian Cancer

Austin K. Mattox (17098866)
Christopher Douville (17098869)
Yuxuan Wang (17098872)
Maria Popoli (17098875)
Janine Ptak (17098878)
Natalie Silliman (17098881)
Lisa Dobbyn (17098884)
Joy Schaefer (17098887)
Steve Lu (17098890)
Alexander H. Pearlman (17098893)
Joshua D. Cohen (17098896)
Jeanne Tie (15021428)
Peter Gibbs (15054841)
Kamel Lahouel (17098899)
Chetan Bettegowda (15997882)
Ralph H. Hruban (15018831)
Cristian Tomasetti (17098902)
Peiyong Jiang (17098905)
K.C. Allen Chan (15111307)
Yuk Ming Dennis Lo (17098908)
Nickolas Papadopoulos (17098911)
Kenneth W. Kinzler (17098914)
Bert Vogelstein (17098917)

October 2023

Supplementary Table 1. Demographic, clinical, and plasma cfDNA data for the patients included in the...

Additional file 1: of Promoter methylation of ADAMTS1 and BNC1 as potential biomarkers for early detection of pancreatic cancer in blood

Maryam Eissa (6561491)
Lane Lerner (5435501)
Eihab Abdelfatah (3955109)
Nakul Shankar (6561503)
Joseph Canner (3467084)
Nesrin Hasan (6561509)
Vesal Yaghoobi (6561512)
Barry Huang (6561515)
Zachary Kerner (3955112)
Felipe Takaesu (6561521)
Christopher Wolfgang (4236652)
Ruby Kwak (6561524)
Michael Ruiz (443083)
Matthew Tam (6561527)
Thomas Pisanic (6561530)
Christine Iacobuzio-Donahue (117065)
Ralph Hruban (6561533)
Jin He (341320)
Tza-Huei Wang (61741)
Laura Wood (3564788)
Anup Sharma (253963)
Nita Ahuja (49818)

April 2019

Table S1. Surgical information. Table S2. Oligonucleotides probe sequences. Table S3. Oligonucleotid...

DNA copy number status is a powerful predictor of poor survival in endocrine pancreatic tumor patients.

Jonkers, Y.M.H.
Claessen, S.M.
Perren, A.
Schmitt, A.M.
Hofland, L.J.
Herder, W. de
Krijger, R.R. de
Verhofstad, A.A.J.
Hermus, A.R.M.M.
Kummer, J.A.
Skogseid, B
Volante, M
Voogd, A.C.
Ramaekers, F.C.S.
Speel, E.J.

January 2007

Contains fulltext : 51988.pdf (publisher's version ) (Open Access)The clinical beh...

Additional file 1: of Cytokeratin 20 positive circulating tumor cells are a marker for response after neoadjuvant chemoradiation but not for prognosis in patients with rectal cancer

Sebastian Hinz (458433)
Christian RĂśder (3532166)
JĂźrgen Tepel (3532163)
Alexander Hendricks (3532139)
Clemens Schafmayer (180631)
Thomas Becker (1225215)
Holger Kalthoff (243490)

December 2015

The figure shows a sample results of CK20 RT-PCR from 16 patients, including two positive controls (...

Additional file 4: Table S2. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Abstract

Extracted data

Additional file 4: Table S2. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Abstract

Extracted data

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