Additional file 5: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma

Stine Henriksen (3398396)
Poul Madsen (3398393)
Anders Larsen (3398384)
Martin Johansen (3398387)
AsbjĂ¸rn Drewes (3398414)
Inge Pedersen (3398390)
Henrik Krarup (213503)
Ole Thorlacius-Ussing (3398381)

Open link

Publication date

November 2016

DOI

10.6084/m9.figshare.c.3595631_d1.v1

Abstract

Correlation between level of cell-free DNA (ng/ml) and total number of hypermethylated genes. (DOCX 15Â kb

Extracted data

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Data Protection

Additional file 5: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma

Stine Henriksen (3398396)
Poul Madsen (3398393)
Anders Larsen (3398384)
Martin Johansen (3398387)
AsbjĂ¸rn Drewes (3398414)
Inge Pedersen (3398390)
Henrik Krarup (213503)
Ole Thorlacius-Ussing (3398381)

Open link

Publication date

November 2016

DOI

10.6084/m9.figshare.c.3595631_d1.v1

Abstract

Correlation between level of cell-free DNA (ng/ml) and total number of hypermethylated genes. (DOCX 15Â kb

Extracted data

Jianzhong Su (235944)
Yung-Hsin Huang (526919)
Xiaodong Cui (115533)
Xinyu Wang (341591)
Xiaotian Zhang (529088)
Yong Lei (337331)
Jianfeng Xu (80211)
Xueqiu Lin (4406707)
Kaifu Chen (116208)
Jie Lv (235936)
Margaret Goodell (4444438)
Wei Li (7081)

August 2018

Table S4. GO functional annotation of pan-cancer hypermethylated, hypomethylated, and conserved Cany...

Additional file 5: Figure S2. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...

Additional file 3: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S1. Single nucleotide polymorphism (SNP) analysis. SNP analysis of 65 genotyping probes on th...

Additional file 1: of Promoter methylation of ADAMTS1 and BNC1 as potential biomarkers for early detection of pancreatic cancer in blood

Maryam Eissa (6561491)
Lane Lerner (5435501)
Eihab Abdelfatah (3955109)
Nakul Shankar (6561503)
Joseph Canner (3467084)
Nesrin Hasan (6561509)
Vesal Yaghoobi (6561512)
Barry Huang (6561515)
Zachary Kerner (3955112)
Felipe Takaesu (6561521)
Christopher Wolfgang (4236652)
Ruby Kwak (6561524)
Michael Ruiz (443083)
Matthew Tam (6561527)
Thomas Pisanic (6561530)
Christine Iacobuzio-Donahue (117065)
Ralph Hruban (6561533)
Jin He (341320)
Tza-Huei Wang (61741)
Laura Wood (3564788)
Anup Sharma (253963)
Nita Ahuja (49818)

April 2019

Table S1. Surgical information. Table S2. Oligonucleotides probe sequences. Table S3. Oligonucleotid...

Additional file 2: Figure S1. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Specificity of KRAS mutation assays (G12D, G12R and G12V) determined by ddPCR of KRAS mutant and WT ...

Additional file 5: Figure S3. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Estimated Survival Curves adjusted by sex and age using Cox regression for CTC and KRAS Mutant model...

Additional file 1: of Hypermethylation of the GATA binding protein 4 (GATA4) promoter in Chinese pediatric acute myeloid leukemia

Yan-Fang Tao (3499682)
Fang Fang (38179)
Shao-Yan Hu (3499700)
Jun Lu (36049)
Lan Cao (512241)
Wen-Li Zhao (3499694)
Pei-Fang Xiao (3499676)
Zhi-Heng Li (3499691)
Na-Na Wang (3499679)
Li-Xiao Xu (3499688)
Xiao-Juan Du (3499685)
Li-Chao Sun (3499697)
Yan-Hong Li (299834)
Yi-Ping Li (2902158)
Yun-Yun Xu (3499673)
Jian Ni (134467)
Jian Wang (5901)
Xing Feng (715316)
Jian Pan (419768)

October 2015

Analysis of promoter methylation in pediatric AML using NimbleGen Human DNA Methylation 385Â K Promo...

Additional file 4: Table S2. of Circulating tumor cells (CTC) and KRAS mutant circulating free DNA (cfDNA) detection in peripheral blood as biomarkers in patients diagnosed with exocrine pancreatic cancer

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Statistical analysis of overall survival with regard to the detection of CTC and mutant KRAS cfDNA i...

Additional file 1: of Comparison of quantification algorithms for circulating cell-free DNA methylation biomarkers in blood plasma from cancer patients

Luka de Vos (4635880)
Heidrun Gevensleben (3308331)
Andreas Schröck (395005)
Alina Franzen (395009)
Glen Kristiansen (76479)
Friedrich Bootz (395015)
Dimo Dietrich (22859)

December 2017

Baseline characteristics and clinicopathological variables. Table with characteristics of HNSCC and ...

Additional file 1: of The clinical significance of FAM19A4 methylation in high-risk HPV-positive cervical samples for the detection of cervical (pre)cancer in Chinese women

Qiaowen Bu (6021281)
Sanfeng Wang (5845580)
Jian Ma (170138)
Xiangcheng Zhou (6021284)
Guiying Hu (466655)
Hua Deng (1335612)
Xiaoli Sun (140478)
Xiaoshan Hong (6021287)
Hengying Wu (6021290)
Liang Zhang (41392)
Xiping Luo (2591440)

November 2018

Amplification curve of FAM19A4 and ACTB genes in cervical cancer, normal peripheral blood DNA, and d...

Additional file 1: Figure S1. of Prediction of cancer progression in a group of 73 gastric cancer patients by circulating cell-free DNA

Wang-Yang Pu (3492590)
Rong Zhang (44942)
Li Xiao (307908)
Yong-You Wu (3492572)
Wei Gong (112494)
Xiao-Dong Lv (3492587)
Feng-Yun Zhong (3492575)
Zhi-Xiang Zhuang (3492578)
Xu-Ming Bai (3492581)
Kai Li (205203)
Chun-Gen Xing (3492584)

December 2016

Results of agarose gel electrophoresis of PCR products obtained with Alu115(0–4) and Alu219(5–9) pri...

Additional file 1: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

Jianzhong Su (235944)
Yung-Hsin Huang (526919)
Xiaodong Cui (115533)
Xinyu Wang (341591)
Xiaotian Zhang (529088)
Yong Lei (337331)
Jianfeng Xu (80211)
Xueqiu Lin (4406707)
Kaifu Chen (116208)
Jie Lv (235936)
Margaret Goodell (4444438)
Wei Li (7081)

August 2018

Table S1. Data resource of WGBS, RNA-seq, and Infinium HumanMethylation 450 BeadChip data. (XLS 720 ...

Additional file 1: of Serum cell-free DNA methylation of OPCML and HOXD9 as a biomarker that may aid in differential diagnosis between cholangiocarcinoma and other biliary diseases

Wiphawan Wasenang (6424124)
Ponlatham Chaiyarit (4811565)
Siriporn Proungvitaya (6424127)
Temduang Limpaiboon (6424130)

March 2019

Figure S1. The optimization of OPCML MS-HRM assay using standard serial dilution series (0–100% meth...

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Additional file 5: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

Jianzhong Su (235944)
Yung-Hsin Huang (526919)
Xiaodong Cui (115533)
Xinyu Wang (341591)
Xiaotian Zhang (529088)
Yong Lei (337331)
Jianfeng Xu (80211)
Xueqiu Lin (4406707)
Kaifu Chen (116208)
Jie Lv (235936)
Margaret Goodell (4444438)
Wei Li (7081)

August 2018

Table S4. GO functional annotation of pan-cancer hypermethylated, hypomethylated, and conserved Cany...

Additional file 5: Figure S2. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...

Additional file 3: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S1. Single nucleotide polymorphism (SNP) analysis. SNP analysis of 65 genotyping probes on th...

Additional file 1: of Promoter methylation of ADAMTS1 and BNC1 as potential biomarkers for early detection of pancreatic cancer in blood

Maryam Eissa (6561491)
Lane Lerner (5435501)
Eihab Abdelfatah (3955109)
Nakul Shankar (6561503)
Joseph Canner (3467084)
Nesrin Hasan (6561509)
Vesal Yaghoobi (6561512)
Barry Huang (6561515)
Zachary Kerner (3955112)
Felipe Takaesu (6561521)
Christopher Wolfgang (4236652)
Ruby Kwak (6561524)
Michael Ruiz (443083)
Matthew Tam (6561527)
Thomas Pisanic (6561530)
Christine Iacobuzio-Donahue (117065)
Ralph Hruban (6561533)
Jin He (341320)
Tza-Huei Wang (61741)
Laura Wood (3564788)
Anup Sharma (253963)
Nita Ahuja (49818)

April 2019

Table S1. Surgical information. Table S2. Oligonucleotides probe sequences. Table S3. Oligonucleotid...

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Specificity of KRAS mutation assays (G12D, G12R and G12V) determined by ddPCR of KRAS mutant and WT ...

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Estimated Survival Curves adjusted by sex and age using Cox regression for CTC and KRAS Mutant model...

Additional file 1: of Hypermethylation of the GATA binding protein 4 (GATA4) promoter in Chinese pediatric acute myeloid leukemia

Yan-Fang Tao (3499682)
Fang Fang (38179)
Shao-Yan Hu (3499700)
Jun Lu (36049)
Lan Cao (512241)
Wen-Li Zhao (3499694)
Pei-Fang Xiao (3499676)
Zhi-Heng Li (3499691)
Na-Na Wang (3499679)
Li-Xiao Xu (3499688)
Xiao-Juan Du (3499685)
Li-Chao Sun (3499697)
Yan-Hong Li (299834)
Yi-Ping Li (2902158)
Yun-Yun Xu (3499673)
Jian Ni (134467)
Jian Wang (5901)
Xing Feng (715316)
Jian Pan (419768)

October 2015

Analysis of promoter methylation in pediatric AML using NimbleGen Human DNA Methylation 385Â K Promo...

Julie Earl (2278957)
Sandra Garcia-Nieto (3537179)
Jose Martinez-Avila (3537185)
José Montans (3537191)
Alfonso Sanjuanbenito (3537176)
Mercedes Rodríguez-Garrote (3537188)
Eduardo Lisa (3537167)
Elena Mendía (3537170)
Eduardo Lobo (3537182)
Núria Malats (135767)
Alfredo Carrato (135757)
Carmen Guillen-Ponce (3537173)

October 2015

Statistical analysis of overall survival with regard to the detection of CTC and mutant KRAS cfDNA i...

Additional file 1: of Comparison of quantification algorithms for circulating cell-free DNA methylation biomarkers in blood plasma from cancer patients

Luka de Vos (4635880)
Heidrun Gevensleben (3308331)
Andreas Schröck (395005)
Alina Franzen (395009)
Glen Kristiansen (76479)
Friedrich Bootz (395015)
Dimo Dietrich (22859)

December 2017

Baseline characteristics and clinicopathological variables. Table with characteristics of HNSCC and ...

Additional file 1: of The clinical significance of FAM19A4 methylation in high-risk HPV-positive cervical samples for the detection of cervical (pre)cancer in Chinese women

Qiaowen Bu (6021281)
Sanfeng Wang (5845580)
Jian Ma (170138)
Xiangcheng Zhou (6021284)
Guiying Hu (466655)
Hua Deng (1335612)
Xiaoli Sun (140478)
Xiaoshan Hong (6021287)
Hengying Wu (6021290)
Liang Zhang (41392)
Xiping Luo (2591440)

November 2018

Amplification curve of FAM19A4 and ACTB genes in cervical cancer, normal peripheral blood DNA, and d...

Additional file 1: Figure S1. of Prediction of cancer progression in a group of 73 gastric cancer patients by circulating cell-free DNA

Wang-Yang Pu (3492590)
Rong Zhang (44942)
Li Xiao (307908)
Yong-You Wu (3492572)
Wei Gong (112494)
Xiao-Dong Lv (3492587)
Feng-Yun Zhong (3492575)
Zhi-Xiang Zhuang (3492578)
Xu-Ming Bai (3492581)
Kai Li (205203)
Chun-Gen Xing (3492584)

December 2016

Results of agarose gel electrophoresis of PCR products obtained with Alu115(0–4) and Alu219(5–9) pri...

Additional file 1: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

Jianzhong Su (235944)
Yung-Hsin Huang (526919)
Xiaodong Cui (115533)
Xinyu Wang (341591)
Xiaotian Zhang (529088)
Yong Lei (337331)
Jianfeng Xu (80211)
Xueqiu Lin (4406707)
Kaifu Chen (116208)
Jie Lv (235936)
Margaret Goodell (4444438)
Wei Li (7081)

August 2018

Table S1. Data resource of WGBS, RNA-seq, and Infinium HumanMethylation 450 BeadChip data. (XLS 720 ...

Additional file 1: of Serum cell-free DNA methylation of OPCML and HOXD9 as a biomarker that may aid in differential diagnosis between cholangiocarcinoma and other biliary diseases

Wiphawan Wasenang (6424124)
Ponlatham Chaiyarit (4811565)
Siriporn Proungvitaya (6424127)
Temduang Limpaiboon (6424130)

March 2019

Figure S1. The optimization of OPCML MS-HRM assay using standard serial dilution series (0–100% meth...

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Additional file 5: of Homeobox oncogene activation by pan-cancer DNA hypermethylation

Jianzhong Su (235944)
Yung-Hsin Huang (526919)
Xiaodong Cui (115533)
Xinyu Wang (341591)
Xiaotian Zhang (529088)
Yong Lei (337331)
Jianfeng Xu (80211)
Xueqiu Lin (4406707)
Kaifu Chen (116208)
Jie Lv (235936)
Margaret Goodell (4444438)
Wei Li (7081)

August 2018

Table S4. GO functional annotation of pan-cancer hypermethylated, hypomethylated, and conserved Cany...

Additional file 5: Figure S2. of DNA hypermethylation and decreased mRNA expression of MAL, PRIMA1, PTGDR and SFRP1 in colorectal adenoma and cancer

Alexandra Kalmár (123738)
Bálint Péterfia (130981)
Péter Hollósi (155769)
Orsolya Galamb (123720)
Sándor Spisák (123726)
Barnabás Wichmann (123721)
András Bodor (439486)
Kinga Tóth (123732)
Árpád Patai (785267)
Gábor Valcz (466332)
Zsófia Nagy (3515417)
Vivien Kubák (3515414)
Zsolt Tulassay (123741)
Ilona Kovalszky (130989)
Béla Molnár (123745)

October 2015

Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...

Additional file 3: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S1. Single nucleotide polymorphism (SNP) analysis. SNP analysis of 65 genotyping probes on th...

Additional file 5: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma

Abstract

Extracted data

Additional file 5: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma

Abstract

Extracted data

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